Evaluating conformational free energies: The colony energy and its application to the problem of loop prediction

Por Xiang, Zhexin, Soto, Cinque S., Honig, Barry
Publicado em 2002

Conformational Dynamics in Loop Swap Mutants of Homologous Fibronectin Type III Domains

Por Siggers, Keri, Soto, Cinque, Palmer, Arthur G.
Publicado em 2007

A Photon-Free Approach to Transmembrane Protein Structure Determination

Por Soto, Cinque S., Hannigan, Brett T., DeGrado, William F.
Publicado em 2011

Loop modeling: Sampling, filtering, and scoring

Por Soto, Cinque S, Fasnacht, Marc, Zhu, Jiang, Forrest, Lucy, Honig, Barry
Publicado em 2008

Structural and Dynamic Mechanisms for the Function and Inhibition of the M2 Proton Channel From Influenza A Virus

Por Wang, Jun, Qiu, Jade Xiaoyan, Soto, Cinque, DeGrado, William F.
Publicado em 2011

Determination of the physiological dimer interface of the PhoQ sensor domain

Por Goldberg, Shalom D., Soto, Cinque S., Waldburger, Carey D., DeGrado, William F.
Publicado em 2008

Assembly of the Transmembrane Domain of E. coli PhoQ Histidine Kinase: Implications for Signal Transduction from Molecular Simulations

Por Lemmin, Thomas, Soto, Cinque S., Clinthorne, Graham, DeGrado, William F., Dal Peraro, Matteo
Publicado em 2013

Structure of the Amantadine Binding Site of Influenza M2 Proton Channels In Lipid Bilayers

Por Cady, Sarah D., Schmidt-Rohr, Klaus, Wang, Jun, Soto, Cinque S., DeGrado, William F., Hong, Mei
Publicado em 2010

Maturation Pathways for the Broad and Potent Antibody 10E8 Using a Combination of Next Generation Sequencing, Bioinformatics and Functional Analysis

Por Soto, Cinque S., Ofek, Gilad, Joyce, M. Gordon, Zhang, Baoshan, McKee, Krisha, Mascola, John R., Kwong, Peter D.
Publicado no AIDS Res Hum Retroviruses (2014)

Molecular Basis of ChvE Function in Sugar Binding, Sugar Utilization, and Virulence in Agrobacterium tumefaciens

Por He, Fanglian, Nair, Gauri R., Soto, Cinque S., Chang, Yehchung, Hsu, Lillian, Ronzone, Erik, DeGrado, William F., Binns, Andrew N.
Publicado em 2009

Species differences in small molecule binding to αIIbβ3 are the result of sequence differences in 2 loops of the αIIb β propeller

Por Basani, Ramesh B., Zhu, Hua, Thornton, Michael A., Soto, Cinque S., DeGrado, William F., Kowalska, M. Anna, Bennett, Joel S., Poncz, Mortimer
Publicado em 2009

Identification of the Pore-lining Residues of the BM2 Ion Channel Protein of Influenza B Virus

Por Ma, Chunlong, Soto, Cinque S., Ohigashi, Yuki, Taylor, Albert, Bournas, Vasilios, Glawe, Brett, Udo, Maria K., DeGrado, William F., Lamb, Robert A., Pinto, Lawrence H.
Publicado em 2008

pH Induced Conformational Change of Influenza M2 Protein C-terminal Domain

Por Nguyen, Phuong A., Soto, Cinque S., Polishchuk, Alexei, Caputo, Gregory A., Tatko, Chad D., Ma, Chunlong, Ohigashi, Yuki, Pinto, Lawrence H., DeGrado, William F., Howard, Kathleen P.
Publicado em 2008

De novo identification of VRC01 class HIV-1–neutralizing antibodies by next-generation sequencing of B-cell transcripts

Por Zhu, Jiang, Wu, Xueling, Zhang, Baoshan, McKee, Krisha, O’Dell, Sijy, Soto, Cinque, Zhou, Tongqing, Casazza, Joseph P., Mullikin, James C., Kwong, Peter D., Mascola, John R., Shapiro, Lawrence
Publicado em 2013

Transplanting Supersites of HIV-1 Vulnerability

Por Zhou, Tongqing, Zhu, Jiang, Yang, Yongping, Gorman, Jason, Ofek, Gilad, Srivatsan, Sanjay, Druz, Aliaksandr, Lees, Christopher R., Lu, Gabriel, Soto, Cinque, Stuckey, Jonathan, Burton, Dennis R., Koff, Wayne C., Connors, Mark, Kwon, Peter D.
Publicado em 2014

Somatic Hypermutation-Induced Changes in the Structure and Dynamics of HIV-1 Broadly Neutralizing Antibodies

Por Davenport, Thaddeus M., Gorman, Jason, Joyce, M. Gordon, Zhou, Tongqing, Soto, Cinque, Guttman, Miklos, Moquin, Stephanie, Yang, Yongping, Zhang, Baoshan, Doria-Rose, Nicole A., Hu, Shiu-Lok, Mascola, John R., Kwong, Peter D., Lee, Kelly K.
Publicado no Structure (2016)

CD4-binding-Site Recognition by VH1-46 Germline-derived HIV-1 Neutralizers

Por Acharya, Priyamvada, Zhou, Tongqing, Soto, Cinque, Chen, Lei, Luongo, Timothy S., Moquin, Stephanie, Georgiev, Ivelin S., Schmidt, Stephen D., Louder, Mark K., Joyce, M. Gordon, Yang, Yongping, Zhang, Baoshan, Scheid, Johannes, Nussenzweig, Michel C., Mascola, John R., Kwong, Peter D.
Publicado no AIDS Res Hum Retroviruses (2014)

Developmental Pathway of the MPER-Directed HIV-1-Neutralizing Antibody 10E8

Por Soto, Cinque, Ofek, Gilad, Joyce, M. Gordon, Zhang, Baoshan, McKee, Krisha, Longo, Nancy S., Yang, Yongping, Huang, Jinghe, Parks, Robert, Eudailey, Joshua, Lloyd, Krissey E., Alam, S. Munir, Haynes, Barton F., Mullikin, James C., Connors, Mark, Mascola, John R., Shapiro, Lawrence, Kwong, Peter D.
Publicado no PLoS One (2016)

A Cysteine Zipper Stabilizes a Pre-Fusion F Glycoprotein Vaccine for Respiratory Syncytial Virus

Por Stewart-Jones, Guillaume B. E., Thomas, Paul V., Chen, Man, Druz, Aliaksandr, Joyce, M. Gordon, Kong, Wing-Pui, Sastry, Mallika, Soto, Cinque, Yang, Yongping, Zhang, Baoshan, Chen, Lei, Chuang, Gwo-Yu, Georgiev, Ivelin S., McLellan, Jason S., Srivatsan, Sanjay, Zhou, Tongqing, Baxa, Ulrich, Mascola, John R., Graham, Barney S., Kwong, Peter D.
Publicado no PLoS One (2015)

Maturation and diversity of the VRC01-antibody lineage over 15 years of chronic HIV-1 infection

Por Wu, Xueling, Zhang, Zhenhai, Schramm, Chaim A., Joyce, M. Gordon, Do Kwon, Young, Zhou, Tongqing, Sheng, Zizhang, Zhang, Baoshan, O'Dell, Sijy, McKee, Krisha, Georgiev, Ivelin S., Chuang, Gwo-Yu, Longo, Nancy S., Lynch, Rebecca M., Saunders, Kevin O., Soto, Cinque, Srivatsan, Sanjay, Yang, Yongping, Bailer, Robert T., Louder, Mark K., Mullikin, James C., Connors, Mark, Kwong, Peter D., Mascola, John R., Shapiro, Lawrence
Publicado no Cell (2015)