Glycosylator: a Python framework for the rapid modeling of glycans

od Lemmin, Thomas, Soto, Cinque
izdano v BMC Bioinformatics (2019)

Evaluating conformational free energies: The colony energy and its application to the problem of loop prediction

od Xiang, Zhexin, Soto, Cinque S., Honig, Barry
Izdano 2002

Conformational Dynamics in Loop Swap Mutants of Homologous Fibronectin Type III Domains

od Siggers, Keri, Soto, Cinque, Palmer, Arthur G.
Izdano 2007

A Photon-Free Approach to Transmembrane Protein Structure Determination

od Soto, Cinque S., Hannigan, Brett T., DeGrado, William F.
Izdano 2011

Loop modeling: Sampling, filtering, and scoring

od Soto, Cinque S, Fasnacht, Marc, Zhu, Jiang, Forrest, Lucy, Honig, Barry
Izdano 2008

Structural and Dynamic Mechanisms for the Function and Inhibition of the M2 Proton Channel From Influenza A Virus

od Wang, Jun, Qiu, Jade Xiaoyan, Soto, Cinque, DeGrado, William F.
Izdano 2011

Determination of the physiological dimer interface of the PhoQ sensor domain

od Goldberg, Shalom D., Soto, Cinque S., Waldburger, Carey D., DeGrado, William F.
Izdano 2008

ClonoMatch: a tool for identifying homologous immunoglobulin and T-cell receptor sequences in large databases

od Jones, Taylor, Day, Samuel B, Myers, Luke, Crowe, James E, Soto, Cinque
izdano v Bioinformatics (2020)

Assembly of the Transmembrane Domain of E. coli PhoQ Histidine Kinase: Implications for Signal Transduction from Molecular Simulations

od Lemmin, Thomas, Soto, Cinque S., Clinthorne, Graham, DeGrado, William F., Dal Peraro, Matteo
Izdano 2013

Immune repertoire fingerprinting by principal component analysis reveals shared features in subject groups with common exposures

od Sevy, Alexander M., Soto, Cinque, Bombardi, Robin G., Meiler, Jens, Crowe, James E.
izdano v BMC Bioinformatics (2019)

Structure of the Amantadine Binding Site of Influenza M2 Proton Channels In Lipid Bilayers

od Cady, Sarah D., Schmidt-Rohr, Klaus, Wang, Jun, Soto, Cinque S., DeGrado, William F., Hong, Mei
Izdano 2010

Maturation Pathways for the Broad and Potent Antibody 10E8 Using a Combination of Next Generation Sequencing, Bioinformatics and Functional Analysis

od Soto, Cinque S., Ofek, Gilad, Joyce, M. Gordon, Zhang, Baoshan, McKee, Krisha, Mascola, John R., Kwong, Peter D.
izdano v AIDS Res Hum Retroviruses (2014)

Molecular Basis of ChvE Function in Sugar Binding, Sugar Utilization, and Virulence in Agrobacterium tumefaciens

od He, Fanglian, Nair, Gauri R., Soto, Cinque S., Chang, Yehchung, Hsu, Lillian, Ronzone, Erik, DeGrado, William F., Binns, Andrew N.
Izdano 2009

Species differences in small molecule binding to αIIbβ3 are the result of sequence differences in 2 loops of the αIIb β propeller

od Basani, Ramesh B., Zhu, Hua, Thornton, Michael A., Soto, Cinque S., DeGrado, William F., Kowalska, M. Anna, Bennett, Joel S., Poncz, Mortimer
Izdano 2009

Structural basis for broad neutralization of ebolaviruses by an antibody targeting the glycoprotein fusion loop

od Janus, Benjamin M., van Dyk, Nydia, Zhao, Xuelian, Howell, Katie A., Soto, Cinque, Aman, M. Javad, Li, Yuxing, Fuerst, Thomas R., Ofek, Gilad
izdano v Nat Commun (2018)

High frequency of shared clonotypes in human B cell receptor repertoires

od Soto, Cinque, Bombardi, Robin G., Branchizio, Andre, Kose, Nurgun, Matta, Pranathi, Sevy, Alexander M., Sinkovits, Robert S., Gilchuk, Pavlo, Finn, Jessica A., Crowe, James E.
izdano v Nature (2019)

PyIR: a scalable wrapper for processing billions of immunoglobulin and T cell receptor sequences using IgBLAST

od Soto, Cinque, Finn, Jessica A., Willis, Jordan R., Day, Samuel B., Sinkovits, Robert S., Jones, Taylor, Schmitz, Samuel, Meiler, Jens, Branchizio, Andre, Crowe, James E.
izdano v BMC Bioinformatics (2020)

Identification of the Pore-lining Residues of the BM2 Ion Channel Protein of Influenza B Virus

od Ma, Chunlong, Soto, Cinque S., Ohigashi, Yuki, Taylor, Albert, Bournas, Vasilios, Glawe, Brett, Udo, Maria K., DeGrado, William F., Lamb, Robert A., Pinto, Lawrence H.
Izdano 2008

Diverse patterns of antibody variable gene repertoire disruption in patients with amyloid light chain (AL) amyloidosis

od Chen, Elaine C., Rubinstein, Samuel, Soto, Cinque, Bombardi, Robin G., Day, Samuel B., Myers, Luke, Zaytsev, Alexey, Majedi, Mahsa, Cornell, R. Frank, Crowe, James E.
izdano v PLoS One (2020)

NMR insights into the conformational properties of Man-9 and its recognition by two HIV binding proteins

od Shahzad-ul-Hussan, Syed, Sastry, Mallika, Lemmin, Thomas, Soto, Cinque, Loesgen, Sandra, Scott, Danielle, Davison, Jack R., O’Connor, Robert, Kwong, Peter D., Bewley, Carole A.
izdano v Chembiochem (2017)