Regarding Blood‐Based Next‐Generation Sequencing Analysis of Appendiceal Cancers

od Shen, John Paul
izdano v Oncologist (2020)

Synthetic Lethal Networks for Precision Oncology: Promises and Pitfalls

od Shen, John Paul, Ideker, Trey
izdano v J Mol Biol (2018)

Lamotrigine-induced hemophagocytic lymphohistiocytosis with Takotsubo cardiomyopathy: a case report

od Zhou, Jenny Y., Martinez, Jordan A., Shen, John Paul
izdano v J Med Case Rep (2019)

Genomic and Proteomic Alterations in Desmoplastic Small Round Blue-Cell Tumors

od Bulbul, Ajaz, Shen, John Paul, Xiu, Joanne, Tamayo, Pablo, Husain, Hatim
izdano v JCO Precis Oncol (2018)

Relative Abundance of SARS-CoV-2 Entry Genes in the Enterocytes of the Lower Gastrointestinal Tract

od Lee, Jaewon J., Kopetz, Scott, Vilar, Eduardo, Shen, John Paul, Chen, Ken, Maitra, Anirban
izdano v Genes (Basel) (2020)

Typing tumors using pathways selected by somatic evolution

od Wang, Sheng, Ma, Jianzhu, Zhang, Wei, Shen, John Paul, Huang, Justin, Peng, Jian, Ideker, Trey
izdano v Nat Commun (2018)

ERCC1 and TS Expression as Prognostic and Predictive Biomarkers in Metastatic Colon Cancer

od Choueiri, Michel B., Shen, John Paul, Gross, Andrew M., Huang, Justin K., Ideker, Trey, Fanta, Paul
izdano v PLoS One (2015)

Ultrahigh-Density Screens for Genome-Wide Yeast EMAPs in a Single Plate

od Licon, Katherine, Shen, John Paul, Munson, Brenton P, Michaca, Manuel, Fassino, Cole, Fassino, Luke, Kreisberg, Jason F, Ideker, Trey
izdano v Methods Mol Biol (2019)

Genetic interaction mapping in mammalian cells using CRISPR interference

od Du, Dan, Roguev, Assen, Gordon, David E, Chen, Meng, Chen, Si-Han, Shales, Michael, Shen, John Paul, Ideker, Trey, Mali, Prashant, Qi, Lei S, Krogan, Nevan J
izdano v Nat Methods (2017)

Few-shot learning creates predictive models of drug response that translate from high-throughput screens to individual patients

od Ma, Jianzhu, Fong, Samson H., Luo, Yunan, Bakkenist, Christopher J., Shen, John Paul, Mourragui, Soufiane, Wessels, Lodewyk F. A., Hafner, Marc, Sharan, Roded, Peng, Jian, Ideker, Trey
izdano v Nat Cancer (2021)

Disruption of NSD1 in head and neck cancer promotes favorable chemotherapeutic responses linked to hypomethylation

od Bui, Nam, Huang, Justin K., Bojorquez-Gomez, Ana, Licon, Katherine, Sanchez, Kyle S., Tang, Sean N., Beckett, Alex N., Wang, Tina, Zhang, Wei, Shen, John Paul, Kreisberg, Jason F., Ideker, Trey
izdano v Mol Cancer Ther (2018)

Genomic Landscape of Appendiceal Neoplasms

od Ang, Celina S.-P., Shen, John Paul, Hardy-Abeloos, Camille J., Huang, Justin K., Ross, Jeffrey S., Miller, Vincent A., Jacobs, Miriam T., Chen, Ingrid L., Xu, David, Ali, Siraj M., Baumgartner, Joel, Lowy, Andrew, Fanta, Paul, Ideker, Trey, Millis, Sherri Z., Harismendy, Olivier
izdano v JCO Precis Oncol (2018)

Chemogenetic profiling identifies RAD17 as synthetically lethal with checkpoint kinase inhibition

od Shen, John Paul, Srivas, Rohith, Gross, Andrew, Li, Jianfeng, Jaehnig, Eric J., Sun, Su Ming, Bojorquez-Gomez, Ana, Licon, Katherine, Sivaganesh, Vignesh, Xu, Jia L., Klepper, Kristin, Yeerna, Huwate, Pekin, Daniel, Qiu, Chu Ping, van Attikum, Haico, Sobol, Robert W., Ideker, Trey
izdano v Oncotarget (2015)

A global transcriptional network connecting noncoding mutations to changes in tumor gene expression

od Zhang, Wei, Bojorquez-Gomez, Ana, Velez, Daniel Ortiz, Xu, Guorong, Sanchez, Kyle S., Shen, John Paul, Chen, Kevin, Licon, Katherine, Melton, Collin, Olson, Katrina M., Yu, Michael Ku, Huang, Justin K., Carter, Hannah, Farley, Emma K., Snyder, Michael, Fraley, Stephanie I., Kreisberg, Jason F., Ideker, Trey
izdano v Nat Genet (2018)

ARID1A mutation may define an immunologically active subgroup in patients with microsatellite-stable colorectal cancer

od Mehrvarz Sarshekeh, Amir, Alshenaifi, Jumanah, Roszik, Jason, Manyam, Ganiraju C., Advani, Shailesh M., Katkhuda, Riham, Verma, Anuj, Lam, Michael, Willis, Jason, Shen, John Paul, Morris, Jeffrey, Davis, Jennifer S., Loree, Jonathan M., Lee, Hey Min, Ajani, Jaffer A., Maru, Dipen M., Overman, Michael J., Kopetz, Scott
izdano v Clin Cancer Res (2021)

Comprehensive Clinical and Molecular Characterization of KRAS(G12C)-Mutant Colorectal Cancer

od Henry, Jason T., Coker, Oluwadara, Chowdhury, Saikat, Shen, John Paul, Morris, Van K., Dasari, Arvind, Raghav, Kanwal, Nusrat, Maliha, Kee, Bryan, Parseghian, Christine, Pant, Shubham, Jeyakumar, Nikeshan, Zhu, Limin, Nishioka, Yujiro, Fogelman, David, Wolff, Robert A., Hong, David, Overman, Michael J., Vauthey, JeanNicolas, Kopetz, Scott, Johnson, Benny
izdano v JCO Precis Oncol (2021)

A network of conserved synthetic lethal interactions for exploration of precision cancer therapy

od Srivas, Rohith, Shen, John Paul, Yang, Chih Cheng, Sun, Su Ming, Li, Jianfeng, Gross, Andrew M., Jensen, James, Licon, Katherine, Bojorquez-Gomez, Ana, Klepper, Kristin, Huang, Justin, Pekin, Daniel, Xu, Jia L., Yeerna, Huwate, Sivaganesh, Vignesh, Kollenstart, Leonie, van Attikum, Haico, Aza-Blanc, Pedro, Sobol, Robert W., Ideker, Trey
izdano v Mol Cell (2016)

Combinatorial CRISPR-Cas9 screens for de novo mapping of genetic interactions

od Shen, John Paul, Zhao, Dongxin, Sasik, Roman, Luebeck, Jens, Birmingham, Amanda, Bojorquez-Gomez, Ana, Licon, Katherine, Klepper, Kristin, Pekin, Daniel, Beckett, Alex, Sanchez, Kyle, Thomas, Alex, Kuo, Chih-Chung, Du, Dan, Roguev, Assen, Lewis, Nathan E., Chang, Aaron N., Kreisberg, Jason F., Krogan, Nevan, Qi, Lei, Ideker, Trey, Mali, Prashant
izdano v Nat Methods (2017)

Chemical genetic strategy identifies histone deacetylase 1 (HDAC1) and HDAC2 as therapeutic targets in sickle cell disease

od Bradner, James E., Mak, Raymond, Tanguturi, Shyam K., Mazitschek, Ralph, Haggarty, Stephen J., Ross, Kenneth, Chang, Cindy Y., Bosco, Jocelyn, West, Nathan, Morse, Elizabeth, Lin, Katherine, Shen, John Paul, Kwiatkowski, Nicholas P., Gheldof, Nele, Dekker, Job, DeAngelo, Daniel J., Carr, Steven A., Schreiber, Stuart L., Golub, Todd R., Ebert, Benjamin L.
Izdano 2010