Determination of the in vivo structural DNA loop organization in the genomic region of the rat albumin locus by means of a topological approach

著者: Rivera-Mulia, Juan Carlos, Aranda-Anzaldo, Armando
出版事項 2010

Replication timing and transcriptional control: beyond cause and effect—part III

著者: Rivera-Mulia, Juan Carlos, Gilbert, David M.
出版年 Curr Opin Cell Biol (2016)

Replicating Large Genomes: Divide and Conquer

著者: Rivera-Mulia, Juan Carlos, Gilbert, David M.
出版年 Mol Cell (2016)

Computing interaction probabilities in signaling networks

著者: Gabr, Haitham, Rivera-Mulia, Juan Carlos, Gilbert, David M., Kahveci, Tamer
出版年 EURASIP J Bioinform Syst Biol (2015)

DNA moves sequentially towards the nuclear matrix during DNA replication in vivo

著者: Rivera-Mulia, Juan Carlos, Hernández-Muñoz, Rolando, Martínez, Federico, Aranda-Anzaldo, Armando
出版事項 2011

RT States: systematic annotation of the human genome using cell type-specific replication timing programs

著者: Poulet, Axel, Li, Ben, Dubos, Tristan, Rivera-Mulia, Juan Carlos, Gilbert, David M, Qin, Zhaohui S
出版年 Bioinformatics (2019)

Replication timing networks reveal a link between transcription regulatory circuits and replication timing control

著者: Rivera-Mulia, Juan Carlos, Kim, Sebo, Gabr, Haitham, Chakraborty, Abhijit, Ay, Ferhat, Kahveci, Tamer, Gilbert, David M.
出版年 Genome Res (2019)

Copy Number Variation Is a Fundamental Aspect of the Placental Genome

著者: Hannibal, Roberta L., Chuong, Edward B., Rivera-Mulia, Juan Carlos, Gilbert, David M., Valouev, Anton, Baker, Julie C.
出版事項 2014

3D genome organization contributes to genome instability at fragile sites

著者: Sarni, Dan, Sasaki, Takayo, Irony Tur-Sinai, Michal, Miron, Karin, Rivera-Mulia, Juan Carlos, Magnuson, Brian, Ljungman, Mats, Gilbert, David M., Kerem, Batsheva
出版年 Nat Commun (2020)

Allele-specific control of replication timing and genome organization during development

著者: Rivera-Mulia, Juan Carlos, Dimond, Andrew, Vera, Daniel, Trevilla-Garcia, Claudia, Sasaki, Takayo, Zimmerman, Jared, Dupont, Catherine, Gribnau, Joost, Fraser, Peter, Gilbert, David M.
出版年 Genome Res (2018)

Genome-wide analysis of replication timing by next-generation sequencing with E/L Repli-seq

著者: Marchal, Claire, Sasaki, Takayo, Vera, Daniel, Wilson, Korey, Sima, Jiao, Rivera-Mulia, Juan Carlos, Trevilla-García, Claudia, Nogues, Coralin, Nafie, Ebtesam, Gilbert, David M.
出版年 Nat Protoc (2018)

Cellular senescence induces replication stress with almost no affect on DNA replication timing

著者: Rivera-Mulia, Juan Carlos, Schwerer, Hélène, Besnard, Emilie, Desprat, Romain, Trevilla-Garcia, Claudia, Sima, Jiao, Bensadoun, Paul, Zouaoui, Anissa, Gilbert, David M., Lemaitre, Jean-Marc
出版年 Cell Cycle (2018)

DNA replication timing alterations identify common markers between distinct progeroid diseases

著者: Rivera-Mulia, Juan Carlos, Desprat, Romain, Trevilla-Garcia, Claudia, Cornacchia, Daniela, Schwerer, Hélène, Sasaki, Takayo, Sima, Jiao, Fells, Tyler, Studer, Lorenz, Lemaitre, Jean-Marc, Gilbert, David M.
出版年 Proc Natl Acad Sci U S A (2017)

Stability of patient-specific features of altered DNA replication timing in xenografts of primary human acute lymphoblastic leukemia

著者: Sasaki, Takayo, Rivera-Mulia, Juan Carlos, Vera, Daniel, Zimmerman, Jared, Das, Sunny, Padget, Michelle, Nakamichi, Naoto, Chang, Bill H., Tyner, Jeff, Druker, Brian J., Weng, Andrew P., Civin, Curt I., Eaves, Connie J., Gilbert, David M.
出版年 Exp Hematol (2017)

Dynamic changes in replication timing and gene expression during lineage specification of human pluripotent stem cells

著者: Rivera-Mulia, Juan Carlos, Buckley, Quinton, Sasaki, Takayo, Zimmerman, Jared, Didier, Ruth A., Nazor, Kristopher, Loring, Jeanne F., Lian, Zheng, Weissman, Sherman, Robins, Allan J., Schulz, Thomas C., Menendez, Laura, Kulik, Michael J., Dalton, Stephen, Gabr, Haitham, Kahveci, Tamer, Gilbert, David M.
出版年 Genome Res (2015)

Rapid Irreversible Transcriptional Reprogramming in Human Stem Cells Accompanied by Discordance between Replication Timing and Chromatin Compartment

著者: Dileep, Vishnu, Wilson, Korey A., Marchal, Claire, Lyu, Xiaowen, Zhao, Peiyao A., Li, Ben, Poulet, Axel, Bartlett, Daniel A., Rivera-Mulia, Juan Carlos, Qin, Zhaohui S., Robins, Allan J., Schulz, Thomas C., Kulik, Michael J., McCord, Rachel Patton, Dekker, Job, Dalton, Stephen, Corces, Victor G., Gilbert, David M.
出版年 Stem Cell Reports (2019)

Replication timing alterations in leukemia affect clinically relevant chromosome domains

著者: Rivera-Mulia, Juan Carlos, Sasaki, Takayo, Trevilla-Garcia, Claudia, Nakamichi, Naoto, Knapp, David J. H. F., Hammond, Colin A., Chang, Bill H., Tyner, Jeffrey W., Devidas, Meenakshi, Zimmerman, Jared, Klein, Kyle N., Somasundaram, Vivek, Druker, Brian J., Gruber, Tanja A., Koren, Amnon, Eaves, Connie J., Gilbert, David M.
出版年 Blood Adv (2019)

4D Genome Rewiring during Oncogene-Induced and Replicative Senescence

著者: Sati, Satish, Bonev, Boyan, Szabo, Quentin, Jost, Daniel, Bensadoun, Paul, Serra, Francois, Loubiere, Vincent, Papadopoulos, Giorgio Lucio, Rivera-Mulia, Juan-Carlos, Fritsch, Lauriane, Bouret, Pauline, Castillo, David, Gelpi, Josep Ll., Orozco, Modesto, Vaillant, Cedric, Pellestor, Franck, Bantignies, Frederic, Marti-Renom, Marc A., Gilbert, David M., Lemaitre, Jean-Marc, Cavalli, Giacomo
出版年 Mol Cell (2020)

Identifying cis elements for spatio-temporal control of mammalian DNA replication

著者: Sima, Jiao, Chakraborty, Abhijit, Dileep, Vishnu, Michalski, Marco, Klein, Kyle N., Holcomb, Nicolas P., Turner, Jesse L., Paulsen, Michelle T., Rivera-Mulia, Juan Carlos, Trevilla-Garcia, Claudia, Bartlett, Daniel A., Zhao, Peiyao A., Washburn, Brian K., Nora, Elphège P., Kraft, Katerina, Mundlos, Stefan, Bruneau, Benoit G., Ljungman, Mats, Fraser, Peter, Ay, Ferhat, Gilbert, David M.
出版年 Cell (2018)

Integrative Detection and Analysis of Structural Variation in Cancer Genomes

著者: Dixon, Jesse R., Xu, Jie, Dileep, Vishnu, Zhan, Ye, Song, Fan, Le, Victoria T., Gürkan Yardımcı, Galip, Chakraborty, Abhijit, Bann, Darrin V., Wang, Yanli, Clark, Royden, Zhang, Lijun, Yang, Hongbo, Liu, Tingting, Iyyanki, Sriranga, An, Lin, Pool, Christopher, Sasaki, Takayo, Rivera-Mulia, Juan Carlos, Ozadam, Hakan, Lajoie, Bryan R., Kaul, Rajinder, Buckley, Michael, Lee, Kristen, Diegel, Morgan, Pezic, Dubravka, Ernst, Christina, Hadjur, Suzana, Odom, Duncan T., Stamatoyannopoulos, John A., Broach, James R., Hardison, Ross C., Ay, Ferhat, Stafford Noble, William, Dekker, Job, Gilbert, David M., Yue, Feng
出版年 Nat Genet (2018)