RINQ: Reference-based Indexing for Network Queries

Por Gülsoy, Günhan, Kahveci, Tamer
Publicado em 2011

Signal reachability facilitates characterization of probabilistic signaling networks

Por Gabr, Haitham, Kahveci, Tamer
Publicado no BMC Bioinformatics (2015)

Identification of large disjoint motifs in biological networks

Por Elhesha, Rasha, Kahveci, Tamer
Publicado no BMC Bioinformatics (2016)

Indexing a protein-protein interaction network expedites network alignment

Por Hasan, Md Mahmudul, Kahveci, Tamer
Publicado no BMC Bioinformatics (2015)

Classification and feature selection algorithms for multi-class CGH data

Por Liu, Jun, Ranka, Sanjay, Kahveci, Tamer
Publicado em 2008

Scalable Steady State Analysis of Boolean Biological Regulatory Networks

Por Ay, Ferhat, Xu, Fei, Kahveci, Tamer
Publicado em 2009

SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings

Por Ay, Ferhat, Kellis, Manolis, Kahveci, Tamer
Publicado em 2011

Metabolic network alignment in large scale by network compression

Por Ay, Ferhat, Dang, Michael, Kahveci, Tamer
Publicado em 2012

HIDEN: Hierarchical decomposition of regulatory networks

Por Gülsoy, Günhan, Bandhyopadhyay, Nirmalya, Kahveci, Tamer
Publicado em 2012

Network-based Prediction of Cancer under Genetic Storm

Por Ay, Ahmet, Gong, Dihong, Kahveci, Tamer
Publicado em 2014

Hierarchical decomposition of dynamically evolving regulatory networks

Por Ay, Ahmet, Gong, Dihong, Kahveci, Tamer
Publicado no BMC Bioinformatics (2015)

ProMotE: an efficient algorithm for counting independent motifs in uncertain network topologies

Por Ren, Yuanfang, Sarkar, Aisharjya, Kahveci, Tamer
Publicado no BMC Bioinformatics (2018)

Shortest path counting in probabilistic biological networks

Por Ren, Yuanfang, Ay, Ahmet, Kahveci, Tamer
Publicado no BMC Bioinformatics (2018)

A scalable method for identifying frequent subtrees in sets of large phylogenetic trees

Por Ramu, Avinash, Kahveci, Tamer, Burleigh, J Gordon
Publicado em 2012

A scalable method for discovering significant subnetworks

Por Hasan, Md Mahmudul, Kavurucu, Yusuf, Kahveci, Tamer
Publicado em 2013

Selected research articles from the 2016 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC)

Por Yoon, Byung-Jun, Qian, Xiaoning, Kahveci, Tamer
Publicado no BMC Bioinformatics (2017)

CMRF: analyzing differential gene regulation in two group perturbation experiments

Por Bandyopadhyay, Nirmalya, Somaiya, Manas, Ranka, Sanjay, Kahveci, Tamer
Publicado em 2012

Large scale analysis of signal reachability

Por Todor, Andrei, Gabr, Haitham, Dobra, Alin, Kahveci, Tamer
Publicado em 2014

Integrating Domain Specific Knowledge and Network Analysis to Predict Drug Sensitivity of Cancer Cell Lines

Por Kim, Sebo, Sundaresan, Varsha, Zhou, Lei, Kahveci, Tamer
Publicado no PLoS One (2016)

Identification of co-evolving temporal networks

Por Elhesha, Rasha, Sarkar, Aisharjya, Boucher, Christina, Kahveci, Tamer
Publicado no BMC Genomics (2019)