Determining Frequent Patterns of Copy Number Alterations in Cancer

by Rapaport, Franck, Leslie, Christina
Published 2010

Classification of arrayCGH data using fused SVM

by Rapaport, Franck, Barillot, Emmanuel, Vert, Jean-Philippe
Published 2008

Classification of microarray data using gene networks

by Dutreix Marie, Zinovyev Andrei, Rapaport Franck, Barillot Emmanuel, Vert Jean-Philippe
Published 2007-02-01

Classification of microarray data using gene networks

by Rapaport, Franck, Zinovyev, Andrei, Dutreix, Marie, Barillot, Emmanuel, Vert, Jean-Philippe
Published 2007

Response to Zhou and Robinson

by Betel, Doron, Socci, Nicholas D., Khanin, Raya, Mason, Christopher E., Rapaport, Franck
Published in Genome Biol (2015)

PopViz: a webserver for visualizing minor allele frequencies and damage prediction scores of human genetic variations

by Zhang, Peng, Bigio, Benedetta, Rapaport, Franck, Zhang, Shen-Ying, Casanova, Jean-Laurent, Abel, Laurent, Boisson, Bertrand, Itan, Yuval
Published in Bioinformatics (2018)

Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data

by Rapaport, Franck, Khanin, Raya, Liang, Yupu, Pirun, Mono, Krek, Azra, Zumbo, Paul, Mason, Christopher E, Socci, Nicholas D, Betel, Doron
Published 2013

Erratum to: Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data

by Rapaport, Franck, Khanin, Raya, Liang, Yupu, Pirun, Mono, Krek, Azra, Zumbo, Paul, Mason, Christopher E., Socci, Nicholas D., Betel, Doron
Published in Genome Biol (2015)

Risk of Disease Progression in Low-Risk MDS is Linked to Distinct Epigenetic Subtypes

by Qin, Tingting, Sotzen, Jason, Rampal, Raajit K., Rapaport, Franck T., Levine, Ross L., Klimek, Virginia, Nimer, Stephen D., Figueroa, Maria E.
Published in Leukemia (2019)

Genetic analysis of five children with essential thrombocytosis identified mutations in cancer-associated genes with roles in transcriptional regulation

by Kucine, Nicole, Viny, Aaron D., Rampal, Raajit, Berger, Michael, Socci, Nicholas, Viale, Agnes, Bussel, James B., Levine, Ross L., Rapaport, Franck
Published in Haematologica (2016)

Common homozygosity for predicted loss-of-function variants reveals both redundant and advantageous effects of dispensable human genes

by Rausell, Antonio, Luo, Yufei, Lopez, Marie, Seeleuthner, Yoann, Rapaport, Franck, Favier, Antoine, Stenson, Peter D., Cooper, David N., Patin, Etienne, Casanova, Jean-Laurent, Quintana-Murci, Lluis, Abel, Laurent
Published in Proc Natl Acad Sci U S A (2020)

Varicella-zoster virus CNS vasculitis and RNA polymerase III gene mutation in identical twins

by Carter-Timofte, Madalina E., Hansen, Anders F., Mardahl, Maibritt, Fribourg, Sébastien, Rapaport, Franck, Zhang, Shen-Ying, Casanova, Jean-Laurent, Paludan, Søren R., Christiansen, Mette, Larsen, Carsten S., Mogensen, Trine H.
Published in Neurol Neuroimmunol Neuroinflamm (2018)

Telomere Length and Associations with Somatic Mutations and Clinical Outcomes in Acute Myeloid Leukemia

by Watts, Justin M., Dumitriu, Bogdan, Hilden, Patrick, Kishtagari, Ashwin, Rapaport, Franck, Chen, Christina, Ahn, Jihae, Devlin, Sean M., Stein, Eytan M., Rampal, Raajit, Levine, Ross L., Young, Neal, Tallman, Martin S.
Published in Leuk Res (2016)

Aid is a key regulator of myeloid/erythroid differentiation and DNA methylation in hematopoietic stem/progenitor cells

by Kunimoto, Hiroyoshi, McKenney, Anna Sophia, Meydan, Cem, Shank, Kaitlyn, Nazir, Abbas, Rapaport, Franck, Durham, Benjamin, Garrett-Bakelman, Francine E., Pronier, Elodie, Shih, Alan H., Melnick, Ari, Chaudhuri, Jayanta, Levine, Ross L.
Published in Blood (2017)

Analysis of tumor- and stroma-supplied proteolytic networks reveals a brain metastasis-promoting role for cathepsin S

by Sevenich, Lisa, Bowman, Robert L., Mason, Steven D., Quail, Daniela F., Rapaport, Franck, Elie, Benelita T., Brogi, Edi, Brastianos, Priscilla K., Hahn, William C., Holsinger, Leslie J., Massagué, Joan, Leslie, Christina S., Joyce, Johanna A.
Published in Nat Cell Biol (2014)

Cooperative Epigenetic Remodeling by TET2 Loss and NRAS Mutation Drives Myeloid Transformation and MEK Inhibitor Sensitivity

by Kunimoto, Hiroyoshi, Meydan, Cem, Nazir, Abbas, Whitfield, Justin, Shank, Kaitlyn, Rapaport, Franck, Maher, Rebecca, Pronier, Elodie, Meyer, Sara C., Garrett-Bakelman, Francine E., Tallman, Martin, Melnick, Ari, Levine, Ross L., Shih, Alan H.
Published in Cancer Cell (2017)

Negative selection on human genes underlying inborn errors depends on disease outcome and both the mode and mechanism of inheritance

by Rapaport, Franck, Boisson, Bertrand, Gregor, Anne, Béziat, Vivien, Boisson-Dupuis, Stéphanie, Bustamante, Jacinta, Jouanguy, Emmanuelle, Puel, Anne, Rosain, Jérémie, Zhang, Qian, Zhang, Shen-Ying, Gleeson, Joseph G., Quintana-Murci, Lluis, Casanova, Jean-Laurent, Abel, Laurent, Patin, Etienne
Published in Proc Natl Acad Sci U S A (2021)

Somatic mutations in leukocytes infiltrating primary breast cancers

by Kleppe, Maria, Comen, Elizabeth, Wen, Hannah Y, Bastian, Lennart, Blum, Brian, Rapaport, Franck T, Keller, Matthew, Granot, Zvika, Socci, Nicolas, Viale, Agnès, You, Daoqi, Benezra, Robert, Weigelt, Britta, Brogi, Edi, Berger, Michael F, Reis-Filho, Jorge S, Levine, Ross L, Norton, Larry
Published in NPJ Breast Cancer (2015)

Jak1 Integrates Cytokine Sensing to Regulate Hematopoietic Stem Cell Function and Stress Hematopoiesis

by Kleppe, Maria, Spitzer, Matthew H., Li, Sheng, Hill, Corinne E., Dong, Lauren, Papalexi, Efthymia, De Groote, Sofie, Bowman, Robert L., Keller, Matthew, Koppikar, Priya, Rapaport, Franck T., Teruya-Feldstein, Julie, Gandara, Jorge, Mason, Christopher E., Nolan, Garry P., Levine, Ross L.
Published in Cell Stem Cell (2017)

Jak1 Integrates Cytokine Sensing to Regulate Hematopoietic Stem Cell Function and Stress Hematopoiesis

by Kleppe, Maria, Spitzer, Matthew H., Li, Sheng, Hill, Corinne E., Dong, Lauren, Papalexi, Efthymia, De Groote, Sofie, Bowman, Robert L., Keller, Matthew, Koppikar, Priya, Rapaport, Franck T., Teruya-Feldstein, Julie, Gandara, Jorge, Mason, Christopher E., Nolan, Garry P., Levine, Ross L.
Published in Cell Stem Cell (2018)