Model selection in the reconstruction of regulatory networks from time-series data

od Barillot Emmanuel, Novikov Eugene
Wydane 2009-05-01

An algorithm for automatic evaluation of the spot quality in two-color DNA microarray experiments

od Novikov, Eugene, Barillot, Emmanuel
Wydane 2005

Regulatory network reconstruction using an integral additive model with flexible kernel functions

od Novikov, Eugene, Barillot, Emmanuel
Wydane 2008

Model selection in the reconstruction of regulatory networks from time-series data

od Novikov, Eugene, Barillot, Emmanuel
Wydane 2009

Classification of arrayCGH data using fused SVM

od Rapaport, Franck, Barillot, Emmanuel, Vert, Jean-Philippe
Wydane 2008

DBcat: a catalog of 500 biological databases

od Discala, Claude, Benigni, Xavier, Barillot, Emmanuel, Vaysseix, Guy
Wydane 2000

Continuous time boolean modeling for biological signaling: application of Gillespie algorithm

od Stoll, Gautier, Viara, Eric, Barillot, Emmanuel, Calzone, Laurence
Wydane 2012

Stability-Based Comparison of Class Discovery Methods for DNA Copy Number Profiles

od Brito, Isabel, Hupé, Philippe, Neuvial, Pierre, Barillot, Emmanuel
Wydane 2013

DeDaL: Cytoscape 3 app for producing and morphing data-driven and structure-driven network layouts

od Czerwinska, Urszula, Calzone, Laurence, Barillot, Emmanuel, Zinovyev, Andrei
Wydane w BMC Syst Biol (2015)

Demarcation of Topologically Associating Domains Is Uncoupled from Enriched CTCF Binding in Developing Zebrafish

od Pérez-Rico, Yuvia A., Barillot, Emmanuel, Shkumatava, Alena
Wydane w iScience (2020)

Modelling of Immune Checkpoint Network Explains Synergistic Effects of Combined Immune Checkpoint Inhibitor Therapy and the Impact of Cytokines in Patient Response

od Kondratova, Maria, Barillot, Emmanuel, Zinovyev, Andrei, Calzone, Laurence
Wydane w Cancers (Basel) (2020)

Synthetic Lethality between Gene Defects Affecting a Single Non-essential Molecular Pathway with Reversible Steps

od Zinovyev, Andrei, Kuperstein, Inna, Barillot, Emmanuel, Heyer, Wolf-Dietrich
Wydane 2013

Tools and best practices for retrotransposon analysis using high-throughput sequencing data

od Teissandier, Aurélie, Servant, Nicolas, Barillot, Emmanuel, Bourc’his, Deborah
Wydane w Mob DNA (2019)

A comprehensive modular map of molecular interactions in RB/E2F pathway

od Calzone, Laurence, Gelay, Amélie, Zinovyev, Andrei, Radvanyi, François, Barillot, Emmanuel
Wydane 2008

girafe – an R/Bioconductor package for functional exploration of aligned next-generation sequencing reads

od Toedling, Joern, Ciaudo, Constance, Voinnet, Olivier, Heard, Edith, Barillot, Emmanuel
Wydane 2010

Sequence Profiling of the Saccharomyces cerevisiae Genome Permits Deconvolution of Unique and Multialigned Reads for Variant Detection

od Jubin, Claire, Serero, Alexandre, Loeillet, Sophie, Barillot, Emmanuel, Nicolas, Alain
Wydane 2014

ROMA: Representation and Quantification of Module Activity from Target Expression Data

od Martignetti, Loredana, Calzone, Laurence, Bonnet, Eric, Barillot, Emmanuel, Zinovyev, Andrei
Wydane w Front Genet (2016)

NaviCom: a web application to create interactive molecular network portraits using multi-level omics data

od Dorel, Mathurin, Viara, Eric, Barillot, Emmanuel, Zinovyev, Andrei, Kuperstein, Inna
Wydane w Database (Oxford) (2017)

Signalling maps in cancer research: construction and data analysis

od Kondratova, Maria, Sompairac, Nicolas, Barillot, Emmanuel, Zinovyev, Andrei, Kuperstein, Inna
Wydane w Database (Oxford) (2018)

Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients

od Béal, Jonas, Montagud, Arnau, Traynard, Pauline, Barillot, Emmanuel, Calzone, Laurence
Wydane w Front Physiol (2019)