RCPedia: a database of retrocopied genes

Autor Navarro, Fábio C. P., Galante, Pedro A. F.
Vydáno 2013

A Genome-Wide Landscape of Retrocopies in Primate Genomes

Autor Navarro, Fábio C.P., Galante, Pedro A.F.
Vydáno v Genome Biol Evol (2015)

Origins and characterization of variants shared between databases of somatic and germline human mutations

Autor Meyerson, William, Leisman, John, Navarro, Fabio C. P., Gerstein, Mark
Vydáno v BMC Bioinformatics (2020)

FANCY: fast estimation of privacy risk in functional genomics data

Autor Gürsoy, Gamze, Brannon, Charlotte M, Navarro, Fabio C P, Gerstein, Mark
Vydáno v Bioinformatics (2020)

Genomics and data science: an application within an umbrella

Autor Navarro, Fábio C. P., Mohsen, Hussein, Yan, Chengfei, Li, Shantao, Gu, Mengting, Meyerson, William, Gerstein, Mark
Vydáno v Genome Biol (2019)

SPLOOCE: A new portal for the analysis of human splicing variants

Autor Kroll, José Eduardo, Galante, Pedro A.F., Ohara, Daniel T., Navarro, Fábio C.P., Ohno-Machado, Lucila, de Souza, Sandro J.
Vydáno 2012

Gene Copy-Number Polymorphism Caused by Retrotransposition in Humans

Autor Schrider, Daniel R., Navarro, Fabio C. P., Galante, Pedro A. F., Parmigiani, Raphael B., Camargo, Anamaria A., Hahn, Matthew W., de Souza, Sandro J.
Vydáno 2013

To mock or not: a comprehensive comparison of mock IP and DNA input for ChIP-seq

Autor Xu, Jinrui, Kudron, Michelle M, Victorsen, Alec, Gao, Jiahao, Ammouri, Haneen N, Navarro, Fabio C P, Gevirtzman, Louis, Waterston, Robert H, White, Kevin P, Reinke, Valerie, Gerstein, Mark
Vydáno v Nucleic Acids Res (2020)

Retroposed copies of RET gene: a somatically acquired event in medullary thyroid carcinoma

Autor Bim, Larissa V., Navarro, Fábio C. P., Valente, Flávia O. F., Lima-Junior, José V., Delcelo, Rosana, Dias-da-Silva, Magnus R., Maciel, Rui M. B., Galante, Pedro A. F., Cerutti, Janete M.
Vydáno v BMC Med Genomics (2019)

FusorSV: an algorithm for optimally combining data from multiple structural variation detection methods

Autor Becker, Timothy, Lee, Wan-Ping, Leone, Joseph, Zhu, Qihui, Zhang, Chengsheng, Liu, Silvia, Sargent, Jack, Shanker, Kritika, Mil-homens, Adam, Cerveira, Eliza, Ryan, Mallory, Cha, Jane, Navarro, Fabio C. P., Galeev, Timur, Gerstein, Mark, Mills, Ryan E., Shin, Dong-Guk, Lee, Charles, Malhotra, Ankit
Vydáno v Genome Biol (2018)

Diverse human extracellular RNAs are widely detected in human plasma

Autor Freedman, Jane E., Gerstein, Mark, Mick, Eric, Rozowsky, Joel, Levy, Daniel, Kitchen, Robert, Das, Saumya, Shah, Ravi, Danielson, Kirsty, Beaulieu, Lea, Navarro, Fabio C. P., Wang, Yaoyu, Galeev, Timur R., Holman, Alex, Kwong, Raymond Y., Murthy, Venkatesh, Tanriverdi, Selim E., Koupenova, Milka, Mikhalev, Ekaterina, Tanriverdi, Kahraman
Vydáno v Nat Commun (2016)

Corrigendum: Diverse human extracellular RNAs are widely detected in human plasma

Autor Freedman, Jane E., Gerstein, Mark, Mick, Eric, Rozowsky, Joel, Levy, Daniel, Kitchen, Robert, Das, Saumya, Shah, Ravi, Danielson, Kirsty, Beaulieu, Lea, Navarro, Fabio C. P., Wang, Yaoyu, Galeev, Timur R., Holman, Alex, Kwong, Raymond Y., Murthy, Venkatesh, Tanriverdi, Selim E., Koupenova, Milka, Mikhalev, Ekaterina, Tanriverdi, Kahraman
Vydáno v Nat Commun (2016)

Mutational analysis of genes coding for cell surface proteins in colorectal cancer cell lines reveal novel altered pathways, druggable mutations and mutated epitopes for targeted t...

Autor Donnard, Elisa, Asprino, Paula F., Correa, Bruna R., Bettoni, Fabiana, Koyama, Fernanda C., Navarro, Fabio C.P., Perez, Rodrigo O., Mariadason, John, Sieber, Oliver M., Strausberg, Robert L., Simpson, Andrew J.G., Jardim, Denis L.F., Reis, Luiz Fernando L., Parmigiani, Raphael B., Galante, Pedro A.F., Camargo, Anamaria A.
Vydáno v Oncotarget (2014)

High IL-1R8 expression in breast tumors promotes tumor growth and contributes to impaired antitumor immunity

Autor Campesato, Luis Felipe, Silva, Ana Paula M., Cordeiro, Luna, Correa, Bruna R., Navarro, Fabio C.P., Zanin, Rafael F., Marçola, Marina, Inoue, Lilian T., Duarte, Mariana L., Molgora, Martina, Pasqualini, Fabio, Massara, Matteo, Galante, Pedro, Barroso-Sousa, Romualdo, Polentarutti, Nadia, Riva, Federica, Costa, Erico T., Mantovani, Alberto, Garlanda, Cecilia, Camargo, Anamaria A.
Vydáno v Oncotarget (2017)

Comprehensive functional genomic resource and integrative model for the human brain

Autor Wang, Daifeng, Liu, Shuang, Warrell, Jonathan, Won, Hyejung, Shi, Xu, Navarro, Fabio C. P., Clarke, Declan, Gu, Mengting, Emani, Prashant, Yang, Yucheng T., Xu, Min, Gandal, Michael J., Lou, Shaoke, Zhang, Jing, Park, Jonathan J., Yan, Chengfei, Rhie, Suhn Kyong, Manakongtreecheep, Kasidet, Zhou, Holly, Nathan, Aparna, Peters, Mette, Mattei, Eugenio, Fitzgerald, Dominic, Brunetti, Tonya, Moore, Jill, Jiang, Yan, Girdhar, Kiran, Hoffman, Gabriel E., Kalayci, Selim, Gümüş, Zeynep H., Crawford, Gregory E., Roussos, Panos, Akbarian, Schahram, Jaffe, Andrew E., White, Kevin P., Weng, Zhiping, Sestan, Nenad, Geschwind, Daniel H., Knowles, James A., Gerstein, Mark B.
Vydáno v Science (2018)

Distinct patterns of somatic alterations in a lymphoblastoid and a tumor genome derived from the same individual

Autor Galante, Pedro A. F., Parmigiani, Raphael B., Zhao, Qi, Caballero, Otávia L., de Souza, Jorge E., Navarro, Fábio C. P., Gerber, Alexandra L., Nicolás, Marisa F., Salim, Anna Christina M., Silva, Ana Paula M., Edsall, Lee, Devalle, Sylvie, Almeida, Luiz G., Ye, Zhen, Kuan, Samantha, Pinheiro, Daniel G., Tojal, Israel, Pedigoni, Renato G., de Sousa, Rodrigo G. M. A., Oliveira, Thiago Y. K., de Paula, Marcelo G., Ohno-Machado, Lucila, Kirkness, Ewen F., Levy, Samuel, da Silva, Wilson A., Vasconcelos, Ana Tereza R., Ren, Bing, Zago, Marco Antonio, Strausberg, Robert L., Simpson, Andrew J. G., de Souza, Sandro J., Camargo, Anamaria A.
Vydáno 2011

Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

Autor Thybert, David, Roller, Maša, Navarro, Fábio C.P., Fiddes, Ian, Streeter, Ian, Feig, Christine, Martin-Galvez, David, Kolmogorov, Mikhail, Janoušek, Václav, Akanni, Wasiu, Aken, Bronwen, Aldridge, Sarah, Chakrapani, Varshith, Chow, William, Clarke, Laura, Cummins, Carla, Doran, Anthony, Dunn, Matthew, Goodstadt, Leo, Howe, Kerstin, Howell, Matthew, Josselin, Ambre-Aurore, Karn, Robert C., Laukaitis, Christina M., Jingtao, Lilue, Martin, Fergal, Muffato, Matthieu, Nachtweide, Stefanie, Quail, Michael A., Sisu, Cristina, Stanke, Mario, Stefflova, Klara, Van Oosterhout, Cock, Veyrunes, Frederic, Ward, Ben, Yang, Fengtang, Yazdanifar, Golbahar, Zadissa, Amonida, Adams, David J., Brazma, Alvis, Gerstein, Mark, Paten, Benedict, Pham, Son, Keane, Thomas M., Odom, Duncan T., Flicek, Paul
Vydáno v Genome Res (2018)

GENCODE reference annotation for the human and mouse genomes

Autor Frankish, Adam, Diekhans, Mark, Ferreira, Anne-Maud, Johnson, Rory, Jungreis, Irwin, Loveland, Jane, Mudge, Jonathan M, Sisu, Cristina, Wright, James, Armstrong, Joel, Barnes, If, Berry, Andrew, Bignell, Alexandra, Carbonell Sala, Silvia, Chrast, Jacqueline, Cunningham, Fiona, Di Domenico, Tomás, Donaldson, Sarah, Fiddes, Ian T, García Girón, Carlos, Gonzalez, Jose Manuel, Grego, Tiago, Hardy, Matthew, Hourlier, Thibaut, Hunt, Toby, Izuogu, Osagie G, Lagarde, Julien, Martin, Fergal J, Martínez, Laura, Mohanan, Shamika, Muir, Paul, Navarro, Fabio C P, Parker, Anne, Pei, Baikang, Pozo, Fernando, Ruffier, Magali, Schmitt, Bianca M, Stapleton, Eloise, Suner, Marie-Marthe, Sycheva, Irina, Uszczynska-Ratajczak, Barbara, Xu, Jinuri, Yates, Andrew, Zerbino, Daniel, Zhang, Yan, Aken, Bronwen, Choudhary, Jyoti S, Gerstein, Mark, Guigó, Roderic, Hubbard, Tim J P, Kellis, Manolis, Paten, Benedict, Reymond, Alexandre, Tress, Michael L, Flicek, Paul
Vydáno v Nucleic Acids Res (2019)

Sixteen diverse laboratory mouse reference genomes define strain specific haplotypes and novel functional loci

Autor Lilue, Jingtao, Doran, Anthony G., Fiddes, Ian T., Abrudan, Monica, Armstrong, Joel, Bennett, Ruth, Chow, William, Collins, Joanna, Collins, Stephan, Czechanski, Anne, Danecek, Petr, Diekhans, Mark, Dolle, Dirk-Dominik, Dunn, Matt, Durbin, Richard, Earl, Dent, Ferguson-Smith, Anne, Flicek, Paul, Flint, Jonathan, Frankish, Adam, Fu, Beiyuan, Gerstein, Mark, Gilbert, James, Goodstadt, Leo, Harrow, Jennifer, Howe, Kerstin, Ibarra-Soria, Ximena, Kolmogorov, Mikhail, Lelliott, Chris, Logan, Darren W., Loveland, Jane, Mathews, Clayton E., Mott, Richard, Muir, Paul, Nachtweide, Stefanie, Navarro, Fabio C.P., Odom, Duncan T., Park, Naomi, Pelan, Sarah, Pham, Son K, Quail, Mike, Reinholdt, Laura, Romoth, Lars, Shirley, Lesley, Sisu, Cristina, Sjoberg-Herrera, Marcela, Stanke, Mario, Steward, Charles, Thomas, Mark, Threadgold, Glen, Thybert, David, Torrance, James, Wong, Kim, Wood, Jonathan, Yalcin, Binnaz, Yang, Fengtang, Adams, David J., Paten, Benedict, Keane, Thomas M.
Vydáno v Nat Genet (2018)

Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition

Autor Rodriguez-Martin, Bernardo, Alvarez, Eva G., Baez-Ortega, Adrian, Zamora, Jorge, Supek, Fran, Demeulemeester, Jonas, Santamarina, Martin, Ju, Young Seok, Temes, Javier, Garcia-Souto, Daniel, Detering, Harald, Li, Yilong, Rodriguez-Castro, Jorge, Dueso-Barroso, Ana, Bruzos, Alicia L., Dentro, Stefan C., Blanco, Miguel G., Contino, Gianmarco, Ardeljan, Daniel, Tojo, Marta, Roberts, Nicola D., Zumalave, Sonia, Edwards, Paul A., Weischenfeldt, Joachim, Puiggròs, Montserrat, Chong, Zechen, Chen, Ken, Lee, Eunjung Alice, Wala, Jeremiah A., Raine, Keiran M., Butler, Adam, Waszak, Sebastian M., Navarro, Fabio C. P., Schumacher, Steven E., Monlong, Jean, Maura, Francesco, Bolli, Niccolo, Bourque, Guillaume, Gerstein, Mark, Park, Peter J., Wedge, David C., Beroukhim, Rameen, Torrents, David, Korbel, Jan O., Martincorena, Iñigo, Fitzgerald, Rebecca C., Van Loo, Peter, Kazazian, Haig H., Burns, Kathleen H., Campbell, Peter J., Tubio, Jose M. C.
Vydáno v Nat Genet (2020)