Computational approaches for discovery of mutational signatures in cancer

par Baez-Ortega, Adrian, Gori, Kevin
Publié dans Brief Bioinform (2017)

Sex disparity in oronasal presentations of canine transmissible venereal tumour

par Strakova, Andrea, Baez-Ortega, Adrian, Wang, Jinhong, Murchison, Elizabeth P.
Publié dans Vet Rec (2022)

Streptococcal group B integrative and mobilizable element IMESag-rpsI encodes a functional relaxase involved in its transfer

par Lorenzo-Diaz, Fabian, Fernández-Lopez, Cris, Douarre, Pierre-Emmanuel, Baez-Ortega, Adrian, Flores, Carlos, Glaser, Philippe, Espinosa, Manuel
Publié dans Open Biol (2016)

Bacterial Salivary Microbiome Associates with Asthma among African American children and young adults

par Espuela-Ortiz, Antonio, Lorenzo-Diaz, Fabian, Baez-Ortega, Adrian, Eng, Celeste, Hernandez-Pacheco, Natalia, Oh, Sam S., Lenoir, Michael, Burchard, Esteban G., Flores, Carlos, Pino-Yanes, Maria
Publié dans Pediatr Pulmonol (2019)

Whole-Exome Sequencing Identifies Somatic Mutations Associated With Mortality in Metastatic Clear Cell Kidney Carcinoma

par Mendoza-Alvarez, Alejandro, Guillen-Guio, Beatriz, Baez-Ortega, Adrian, Hernandez-Perez, Carolina, Lakhwani-Lakhwani, Sita, Maeso, Maria-del-Carmen, Lorenzo-Salazar, Jose M., Morales, Manuel, Flores, Carlos
Publié dans Front Genet (2019)

The evolution of two transmissible cancers in Tasmanian devils

par Stammnitz, Maximilian R., Gori, Kevin, Kwon, Young Mi, Harry, Ed, Martin, Fergal J., Billis, Konstantinos, Cheng, Yuanyuan, Baez-Ortega, Adrian, Chow, William, Comte, Sebastien, Eggertsson, Hannes, Fox, Samantha, Hamede, Rodrigo, Jones, Menna, Lazenby, Billie, Peck, Sarah, Pye, Ruth, Quail, Michael A., Swift, Kate, Wang, Jinhong, Wood, Jonathan, Howe, Kerstin, Stratton, Michael R., Ning, Zemin, Murchison, Elizabeth P.
Publié dans Science (2023)

Evolution and lineage dynamics of a transmissible cancer in Tasmanian devils

par Kwon, Young Mi, Gori, Kevin, Park, Naomi, Potts, Nicole, Swift, Kate, Wang, Jinhong, Stammnitz, Maximilian R., Cannell, Naomi, Baez-Ortega, Adrian, Comte, Sebastien, Fox, Samantha, Harmsen, Colette, Huxtable, Stewart, Jones, Menna, Kreiss, Alexandre, Lawrence, Clare, Lazenby, Billie, Peck, Sarah, Pye, Ruth, Woods, Gregory, Zimmermann, Mona, Wedge, David C., Pemberton, David, Stratton, Michael R., Hamede, Rodrigo, Murchison, Elizabeth P.
Publié dans PLoS Biol (2020)

The Origins and Vulnerabilities of Two Transmissible Cancers in Tasmanian Devils

par Stammnitz, Maximilian R., Coorens, Tim H.H., Gori, Kevin C., Hayes, Dane, Fu, Beiyuan, Wang, Jinhong, Martin-Herranz, Daniel E., Alexandrov, Ludmil B., Baez-Ortega, Adrian, Barthorpe, Syd, Beck, Alexandra, Giordano, Francesca, Knowles, Graeme W., Kwon, Young Mi, Hall, George, Price, Stacey, Pye, Ruth J., Tubio, Jose M.C., Siddle, Hannah V.T., Sohal, Sukhwinder Singh, Woods, Gregory M., McDermott, Ultan, Yang, Fengtang, Garnett, Mathew J., Ning, Zemin, Murchison, Elizabeth P.
Publié dans Cancer Cell (2018)

Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition

par Rodriguez-Martin, Bernardo, Alvarez, Eva G., Baez-Ortega, Adrian, Zamora, Jorge, Supek, Fran, Demeulemeester, Jonas, Santamarina, Martin, Ju, Young Seok, Temes, Javier, Garcia-Souto, Daniel, Detering, Harald, Li, Yilong, Rodriguez-Castro, Jorge, Dueso-Barroso, Ana, Bruzos, Alicia L., Dentro, Stefan C., Blanco, Miguel G., Contino, Gianmarco, Ardeljan, Daniel, Tojo, Marta, Roberts, Nicola D., Zumalave, Sonia, Edwards, Paul A., Weischenfeldt, Joachim, Puiggròs, Montserrat, Chong, Zechen, Chen, Ken, Lee, Eunjung Alice, Wala, Jeremiah A., Raine, Keiran M., Butler, Adam, Waszak, Sebastian M., Navarro, Fabio C. P., Schumacher, Steven E., Monlong, Jean, Maura, Francesco, Bolli, Niccolo, Bourque, Guillaume, Gerstein, Mark, Park, Peter J., Wedge, David C., Beroukhim, Rameen, Torrents, David, Korbel, Jan O., Martincorena, Iñigo, Fitzgerald, Rebecca C., Van Loo, Peter, Kazazian, Haig H., Burns, Kathleen H., Campbell, Peter J., Tubio, Jose M. C.
Publié dans Nat Genet (2020)

Somatic evolution and global expansion of an ancient transmissible cancer lineage

par Baez-Ortega, Adrian, Gori, Kevin, Strakova, Andrea, Allen, Janice L., Allum, Karen M., Bansse-Issa, Leontine, Bhutia, Thinlay N., Bisson, Jocelyn L., Briceño, Cristóbal, Domracheva, Artemio Castillo, Corrigan, Anne M., Cran, Hugh R., Crawford, Jane T., Davis, Eric, de Castro, Karina F., de Nardi, Andrigo B., de Vos, Anna P., Keenan, Laura Delgadillo, Donelan, Edward M., Huerta, Adela R. Espinoza, Faramade, Ibikunle A., Fazil, Mohammed, Fotopoulou, Eleni, Fruean, Skye N., Gallardo-Arrieta, Fanny, Glebova, Olga, Gouletsou, Pagona G., Manrique, Rodrigo F. Häfelin, Henriques, Joaquim J.G.P., Horta, Rodrigo S., Ignatenko, Natalia, Kane, Yaghouba, King, Cathy, Koenig, Debbie, Krupa, Ada, Kruzeniski, Steven J., Kwon, Young-Mi, Lanza-Perea, Marta, Lazyan, Mihran, Quintana, Adriana M. Lopez, Losfelt, Thibault, Marino, Gabriele, Castañeda, Simón Martínez, Martínez-López, Mayra F., Meyer, Michael, Migneco, Edward J., Nakanwagi, Berna, Neal, Karter B., Neunzig, Winifred, Leathlobhair, Máire Ní, Nixon, Sally J., Ortega-Pacheco, Antonio, Pedraza-Ordoñez, Francisco, Peleteiro, Maria C., Polak, Katherine, Pye, Ruth J., Reece, John F., Gutierrez, Jose Rojas, Sadia, Haleema, Schmeling, Sheila K., Shamanova, Olga, Sherlock, Alan G., Stammnitz, Maximilian, Steenland-Smit, Audrey E., Svitich, Alla, Martínez, Lester J. Tapia, Ngoka, Ismail Thoya, Torres, Cristian G., Tudor, Elizabeth M., van der Wel, Mirjam G., Vițălaru, Bogdan A., Vural, Sevil A., Walkinton, Oliver, Wang, Jinhong, Wehrle-Martinez, Alvaro S., Widdowson, Sophie A.E., Stratton, Michael R., Alexandrov, Ludmil B., Martincorena, Iñigo, Murchison, Elizabeth P.
Publié dans Science (2019)

Recurrent horizontal transfer identifies mitochondrial positive selection in a transmissible cancer

par Strakova, Andrea, Nicholls, Thomas J., Baez-Ortega, Adrian, Ní Leathlobhair, Máire, Sampson, Alexander T., Hughes, Katherine, Bolton, Isobelle A. G., Gori, Kevin, Wang, Jinhong, Airikkala-Otter, Ilona, Allen, Janice L., Allum, Karen M., Arnold, Clara L., Bansse-Issa, Leontine, Bhutia, Thinlay N., Bisson, Jocelyn L., Blank, Kelli, Briceño, Cristóbal, Castillo Domracheva, Artemio, Corrigan, Anne M., Cran, Hugh R., Crawford, Jane T., Cutter, Stephen M., Davis, Eric, de Castro, Karina F., De Nardi, Andrigo B., de Vos, Anna P., Delgadillo Keenan, Laura, Donelan, Edward M., Espinoza Huerta, Adela R., Faramade, Ibikunle A., Fazil, Mohammed, Fotopoulou, Eleni, Fruean, Skye N., Gallardo-Arrieta, Fanny, Glebova, Olga, Gouletsou, Pagona G., Häfelin Manrique, Rodrigo F., Henriques, Joaquim J. G. P., Horta, Rodrigo S., Ignatenko, Natalia, Kane, Yaghouba, King, Cathy, Koenig, Debbie, Krupa, Ada, Kruzeniski, Steven J., Lanza-Perea, Marta, Lazyan, Mihran, Lopez Quintana, Adriana M., Losfelt, Thibault, Marino, Gabriele, Martínez Castañeda, Simón, Martínez-López, Mayra F., Masuruli, Bedan M., Meyer, Michael, Migneco, Edward J., Nakanwagi, Berna, Neal, Karter B., Neunzig, Winifred, Nixon, Sally J., Ortega-Pacheco, Antonio, Pedraza-Ordoñez, Francisco, Peleteiro, Maria C., Polak, Katherine, Pye, Ruth J., Ramirez-Ante, Juan C., Reece, John F., Rojas Gutierrez, Jose, Sadia, Haleema, Schmeling, Sheila K., Shamanova, Olga, Sherlock, Alan G., Steenland-Smit, Audrey E., Svitich, Alla, Tapia Martínez, Lester J., Thoya Ngoka, Ismail, Torres, Cristian G., Tudor, Elizabeth M., van der Wel, Mirjam G., Vițălaru, Bogdan A., Vural, Sevil A., Walkinton, Oliver, Wehrle-Martinez, Alvaro S., Widdowson, Sophie A. E., Zvarich, Irina, Chinnery, Patrick F., Falkenberg, Maria, Gustafsson, Claes M., Murchison, Elizabeth P.
Publié dans Nat Commun (2020)