Sequence-based prediction of protein-protein interactions by means of codon usage

Por Najafabadi, Hamed Shateri, Salavati, Reza
Publicado em 2008

Functional Genome Annotation by Combined Analysis across Microarray Studies of Trypanosoma brucei

Por Shateri Najafabadi, Hamed, Salavati, Reza
Publicado em 2010

Designing multiple degenerate primers via consecutive pairwise alignments

Por Torabi Noorossadat, Najafabadi Hamed, Chamankhah Mahmood
Publicado em 2008-01-01

Designing multiple degenerate primers via consecutive pairwise alignments

Por Najafabadi, Hamed Shateri, Torabi, Noorossadat, Chamankhah, Mahmood
Publicado em 2008

Universal function-specificity of codon usage

Por Najafabadi, Hamed Shateri, Goodarzi, Hani, Salavati, Reza
Publicado em 2009

Genome-wide computational identification of functional RNA elements in Trypanosoma brucei

Por Mao, Yuan, Najafabadi, Hamed Shateri, Salavati, Reza
Publicado em 2009

Identification of C2H2-ZF binding preferences from ChIP-seq data using RCADE

Por Najafabadi, Hamed S., Albu, Mihai, Hughes, Timothy R.
Publicado no Bioinformatics (2015)

Inference of RNA decay rate from transcriptional profiling highlights the regulatory programs of Alzheimer’s disease

Por Alkallas, Rached, Fish, Lisa, Goodarzi, Hani, Najafabadi, Hamed S.
Publicado no Nat Commun (2017)

Inhibitors of RNA editing as potential chemotherapeutics against trypanosomatid pathogens

Por Salavati, Reza, Moshiri, Houtan, Kala, Smriti, Shateri Najafabadi, Hamed
Publicado em 2011

Motif comparison based on similarity of binding affinity profiles

Por Lambert, Samuel A., Albu, Mihai, Hughes, Timothy R., Najafabadi, Hamed S.
Publicado no Bioinformatics (2016)

Naphthalene-based RNA Editing Inhibitor Blocks RNA Editing Activities and Editosome Assembly in Trypanosoma brucei

Por Moshiri, Houtan, Acoca, Stéphane, Kala, Smriti, Najafabadi, Hamed Shateri, Hogues, Hervé, Purisima, Enrico, Salavati, Reza
Publicado em 2011

Global identification of conserved post-transcriptional regulatory programs in trypanosomatids

Por Najafabadi, Hamed S., Lu, Zhiquan, MacPherson, Chad, Mehta, Vaibhav, Adoue, Véronique, Pastinen, Tomi, Salavati, Reza
Publicado em 2013

A structural approach reveals how neighbouring C2H2 zinc fingers influence DNA binding specificity

Por Garton, Michael, Najafabadi, Hamed S., Schmitges, Frank W., Radovani, Ernest, Hughes, Timothy R., Kim, Philip M.
Publicado no Nucleic Acids Res (2015)

A Protein Complex Map of Trypanosoma brucei

Por Gazestani, Vahid H., Nikpour, Najmeh, Mehta, Vaibhav, Najafabadi, Hamed S., Moshiri, Houtan, Jardim, Armando, Salavati, Reza
Publicado no PLoS Negl Trop Dis (2016)

Non-base-contacting residues enable kaleidoscopic evolution of metazoan C2H2 zinc finger DNA binding

Por Najafabadi, Hamed S., Garton, Michael, Weirauch, Matthew T., Mnaimneh, Sanie, Yang, Ally, Kim, Philip M., Hughes, Timothy R.
Publicado no Genome Biol (2017)

Systematic Discovery of Structural Elements Governing Mammalian mRNA Stability

Por Goodarzi, Hani, Najafabadi, Hamed S., Oikonomou, Panos, Greco, Todd M., Fish, Lisa, Salavati, Reza, Cristea, Ileana M., Tavazoie, Saeed
Publicado em 2012

Aberration hubs in protein interaction networks highlight actionable targets in cancer

Por Karimzadeh, Mehran, Jandaghi, Pouria, Papadakis, Andreas I., Trainor, Sebastian, Rung, Johan, Gonzàlez-Porta, Mar, Scelo, Ghislaine, Vasudev, Naveen S., Brazma, Alvis, Huang, Sidong, Banks, Rosamonde E., Lathrop, Mark, Najafabadi, Hamed S., Riazalhosseini, Yasser
Publicado no Oncotarget (2018)

Mapping and analysis of Caenorhabditis elegans transcription factor sequence specificities

Por Narasimhan, Kamesh, Lambert, Samuel A, Yang, Ally WH, Riddell, Jeremy, Mnaimneh, Sanie, Zheng, Hong, Albu, Mihai, Najafabadi, Hamed S, Reece-Hoyes, John S, Fuxman Bass, Juan I, Walhout, Albertha JM, Weirauch, Matthew T, Hughes, Timothy R
Publicado no eLife (2015)

Multiparameter functional diversity of human C2H2 zinc finger proteins

Por Schmitges, Frank W., Radovani, Ernest, Najafabadi, Hamed S., Barazandeh, Marjan, Campitelli, Laura F., Yin, Yimeng, Jolma, Arttu, Zhong, Guoqing, Guo, Hongbo, Kanagalingam, Tharsan, Dai, Wei F., Taipale, Jussi, Emili, Andrew, Greenblatt, Jack F., Hughes, Timothy R.
Publicado no Genome Res (2016)

The human splicing code reveals new insights into the genetic determinants of disease

Por Xiong, Hui Y., Alipanahi, Babak, Lee, Leo J., Bretschneider, Hannes, Merico, Daniele, Yuen, Ryan K.C., Hua, Yimin, Gueroussov, Serge, Najafabadi, Hamed S., Hughes, Timothy R., Morris, Quaid, Barash, Yoseph, Krainer, Adrian R., Jojic, Nebojsa, Scherer, Stephen W., Blencowe, Benjamin J., Frey, Brendan J.
Publicado no Science (2014)