How to visually interpret biological data using networks

gan Merico, Daniele, Gfeller, David, Bader, Gary D
Cyhoeddwyd 2009

WordCloud: a Cytoscape plugin to create a visual semantic summary of networks

gan Oesper, Layla, Merico, Daniele, Isserlin, Ruth, Bader, Gary D
Cyhoeddwyd 2011

Genetic Analysis Workshop 18 single-nucleotide variant prioritization based on protein impact, sequence conservation, and gene annotation

gan Nalpathamkalam, Thomas, Derkach, Andriy, Paterson, Andrew D, Merico, Daniele
Cyhoeddwyd 2014

Enrichment Map – a Cytoscape app to visualize and explore OMICs pathway enrichment results

gan Isserlin, Ruth, Merico, Daniele, Voisin, Veronique, Bader, Gary D.
Cyhoeddwyd 2014

Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation

gan Merico, Daniele, Isserlin, Ruth, Stueker, Oliver, Emili, Andrew, Bader, Gary D.
Cyhoeddwyd 2010

Evaluation of gene-based association tests for analyzing rare variants using Genetic Analysis Workshop 18 data

gan Derkach, Andriy, Lawless , Jerry F, Merico, Daniele, Paterson, Andrew D, Sun, Lei
Cyhoeddwyd 2014

MicroRNA Expression during Bovine Oocyte Maturation and Fertilization

gan Gilchrist, Graham C., Tscherner, Allison, Nalpathamkalam, Thomas, Merico, Daniele, LaMarre, Jonathan
Cyhoeddwyd yn Int J Mol Sci (2016)

Using Next-Generation Sequencing Transcriptomics To Determine Markers of Post-traumatic Symptoms: Preliminary Findings from a Post-deployment Cohort of Soldiers

gan Boscarino, Cathy, Nalpathamkalam, Thomas, Pellecchia, Giovanna, Li, Weili, Thiruvahindrapuram, Bhooma, Merico, Daniele
Cyhoeddwyd yn G3 (Bethesda) (2019)

A balance between NF-Y and p53 governs the pro- and anti-apoptotic transcriptional response

gan Benatti, Paolo, Basile, Valentina, Merico, Daniele, Fantoni, Luca Isaia, Tagliafico, Enrico, Imbriano, Carol
Cyhoeddwyd 2008

Pathway analysis of dilated cardiomyopathy using global proteomic profiling and enrichment maps

gan Isserlin, Ruth, Merico, Daniele, Alikhani-Koupaei, Rasoul, Gramolini, Anthony, Bader, Gary D, Emili, Andrew
Cyhoeddwyd 2010

The Histone-Like NF-Y Is a Bifunctional Transcription Factor

gan Ceribelli, Michele, Dolfini, Diletta, Merico, Daniele, Gatta, Raffaella, Viganò, Alessandra M., Pavesi, Giulio, Mantovani, Roberto
Cyhoeddwyd 2008

Protein Kinase C Epsilon and Genetic Networks in Osteosarcoma Metastasis

gan Goudarzi, Atta, Gokgoz, Nalan, Gill, Mona, Pinnaduwage, Dushanthi, Merico, Daniele, Wunder, Jay S., Andrulis, Irene L.
Cyhoeddwyd 2013

Performance of case-control rare copy number variation annotation in classification of autism

gan Engchuan, Worrawat, Dhindsa, Kiret, Lionel, Anath C, Scherer, Stephen W, Chan, Jonathan H, Merico, Daniele
Cyhoeddwyd yn BMC Med Genomics (2015)

Systems analysis reveals down-regulation of a network of pro-survival miRNAs drives the apoptotic response in dilated cardiomyopathy

gan Isserlin, Ruth, Merico, Daniele, Wang, Dingyan, Vuckovic, Dajana, Bousette, Nicolas, Gramolini, Anthony O., Bader, Gary D., Emili, Andrew
Cyhoeddwyd yn Mol Biosyst (2014)

Transcriptional Network of p63 in Human Keratinocytes

gan Pozzi, Silvia, Zambelli, Federico, Merico, Daniele, Pavesi, Giulio, Robert, Amélie, Maltère, Peggy, Gidrol, Xavier, Mantovani, Roberto, Vigano, M. Alessandra
Cyhoeddwyd 2009

MicroRNA Dysregulation, Gene Networks, and Risk for Schizophrenia in 22q11.2 Deletion Syndrome

gan Merico, Daniele, Costain, Gregory, Butcher, Nancy J., Warnica, William, Ogura, Lucas, Alfred, Simon E., Brzustowicz, Linda M., Bassett, Anne S.
Cyhoeddwyd yn Front Neurol (2014)

Copy Number Variable MicroRNAs in Schizophrenia and Their Neurodevelopmental Gene Targets

gan Warnica, William, Merico, Daniele, Costain, Gregory, Alfred, Simon E., Wei, John, Marshall, Christian R., Scherer, Stephen W., Bassett, Anne S.
Cyhoeddwyd yn Biol Psychiatry (2014)

A homozygous mutation in the stem II domain of RNU4ATAC causes typical Roifman syndrome

gan Dinur Schejter, Yael, Ovadia, Adi, Alexandrova, Roumiana, Thiruvahindrapuram, Bhooma, Pereira, Sergio L., Manson, David E., Vincent, Ajoy, Merico, Daniele, Roifman, Chaim M.
Cyhoeddwyd yn NPJ Genom Med (2017)

New p63 targets in keratinocytes identified by a genome-wide approach

gan Viganò, M Alessandra, Lamartine, Jérôme, Testoni, Barbara, Merico, Daniele, Alotto, Daniela, Castagnoli, Carlotta, Robert, Amèlie, Candi, Eleonora, Melino, Gerry, Gidrol, Xavier, Mantovani, Roberto
Cyhoeddwyd 2006

Whole-genome sequencing suggests mechanisms for 22q11.2 deletion-associated Parkinson’s disease

gan Butcher, Nancy J., Merico, Daniele, Zarrei, Mehdi, Ogura, Lucas, Marshall, Christian R., Chow, Eva W. C., Lang, Anthony E., Scherer, Stephen W., Bassett, Anne S.
Cyhoeddwyd yn PLoS One (2017)