Evaluation of Quality Assessment Protocols for High Throughput Genome Resequencing Data

著者: Chiara, Matteo, Pavesi, Giulio
出版年 Front Genet (2017)

WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences

著者: Pavesi, Giulio, Zambelli, Federico, Pesole, Graziano
出版事項 2007

Phylogenetic analyses suggest multiple changes of substrate specificity within the Glycosyl hydrolase 20 family

著者: Intra, Jari, Pavesi, Giulio, Horner, David S
出版事項 2008

Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes

著者: Zambelli, Federico, Pesole, Graziano, Pavesi, Giulio
出版事項 2009

Motif discovery and transcription factor binding sites before and after the next-generation sequencing era

著者: Zambelli, Federico, Pesole, Graziano, Pavesi, Giulio
出版事項 2013

PscanChIP: finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments

著者: Zambelli, Federico, Pesole, Graziano, Pavesi, Giulio
出版事項 2013

RNAProfile: an algorithm for finding conserved secondary structure motifs in unaligned RNA sequences

著者: Pavesi, Giulio, Mauri, Giancarlo, Stefani, Marco, Pesole, Graziano
出版事項 2004

Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes

著者: Pavesi, Giulio, Mereghetti, Paolo, Mauri, Giancarlo, Pesole, Graziano
出版事項 2004

Exalign: a new method for comparative analysis of exon–intron gene structures

著者: Pavesi, Giulio, Zambelli, Federico, Caggese, Corrado, Pesole, Graziano
出版事項 2008

Cscan: finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets

著者: Zambelli, Federico, Prazzoli, Gian Marco, Pesole, Graziano, Pavesi, Giulio
出版事項 2012

Assessment of orthologous splicing isoforms in human and mouse orthologous genes

著者: Zambelli, Federico, Pavesi, Giulio, Gissi, Carmela, Horner, David S, Pesole, Graziano
出版事項 2010

A high definition look at the NF-Y regulome reveals genome-wide associations with selected transcription factors

著者: Dolfini, Diletta, Zambelli, Federico, Pedrazzoli, Maurizio, Mantovani, Roberto, Pavesi, Giulio
出版年 Nucleic Acids Res (2016)

Integrating Peak Colocalization and Motif Enrichment Analysis for the Discovery of Genome-Wide Regulatory Modules and Transcription Factor Recruitment Rules

著者: Ronzio, Mirko, Zambelli, Federico, Dolfini, Diletta, Mantovani, Roberto, Pavesi, Giulio
出版年 Front Genet (2020)

On the NF-Y regulome as in ENCODE (2019)

著者: Ronzio, Mirko, Bernardini, Andrea, Pavesi, Giulio, Mantovani, Roberto, Dolfini, Diletta
出版年 PLoS Comput Biol (2020)

Cleaning the Medicago Microarray Database to Improve Gene Function Analysis

著者: Marzorati, Francesca, Wang, Chu, Pavesi, Giulio, Mizzi, Luca, Morandini, Piero
出版年 Plants (Basel) (2021)

MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes

著者: Pavesi, Giulio, Mereghetti, Paolo, Zambelli, Federico, Stefani, Marco, Mauri, Giancarlo, Pesole, Graziano
出版事項 2006

Genomic Organization and Evolutionary Conservation of Plant D-Type Cyclins

著者: Menges, Margit, Pavesi, Giulio, Morandini, Piero, Bögre, Laszlo, Murray, James A.H.
出版事項 2007

SWIM: a computational tool to unveiling crucial nodes in complex biological networks

著者: Paci, Paola, Colombo, Teresa, Fiscon, Giulia, Gurtner, Aymone, Pavesi, Giulio, Farina, Lorenzo
出版年 Sci Rep (2017)

Erratum: SWIM: a computational tool to unveiling crucial nodes in complex biological networks

著者: Paci, Paola, Colombo, Teresa, Fiscon, Giulia, Gurtner, Aymone, Pavesi, Giulio, Farina, Lorenzo
出版年 Sci Rep (2017)

NF-Y coassociates with FOS at promoters, enhancers, repetitive elements, and inactive chromatin regions, and is stereo-positioned with growth-controlling transcription factors

著者: Fleming, Joseph D., Pavesi, Giulio, Benatti, Paolo, Imbriano, Carol, Mantovani, Roberto, Struhl, Kevin
出版事項 2013