The Biomolecular Interaction Network Database in PSI-MI 2.5

Por Isserlin, Ruth, El-Badrawi, Rashad A., Bader, Gary D.
Publicado em 2011

WordCloud: a Cytoscape plugin to create a visual semantic summary of networks

Por Oesper, Layla, Merico, Daniele, Isserlin, Ruth, Bader, Gary D
Publicado em 2011

Enrichment Map – a Cytoscape app to visualize and explore OMICs pathway enrichment results

Por Isserlin, Ruth, Merico, Daniele, Voisin, Veronique, Bader, Gary D.
Publicado em 2014

AutoAnnotate: A Cytoscape app for summarizing networks with semantic annotations

Por Kucera, Mike, Isserlin, Ruth, Arkhangorodsky, Arkady, Bader, Gary D.
Publicado no F1000Res (2016)

Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation

Por Merico, Daniele, Isserlin, Ruth, Stueker, Oliver, Emili, Andrew, Bader, Gary D.
Publicado em 2010

Social Network: a Cytoscape app for visualizing co-authorship networks

Por Kofia, Victor, Isserlin, Ruth, Buchan, Alison M.J., Bader, Gary D.
Publicado no F1000Res (2015)

RCy3: Network biology using Cytoscape from within R

Por Gustavsen, Julia A., Pai, Shraddha, Isserlin, Ruth, Demchak, Barry, Pico, Alexander R.
Publicado no F1000Res (2019)

Pathway analysis of dilated cardiomyopathy using global proteomic profiling and enrichment maps

Por Isserlin, Ruth, Merico, Daniele, Alikhani-Koupaei, Rasoul, Gramolini, Anthony, Bader, Gary D, Emili, Andrew
Publicado em 2010

netDx: interpretable patient classification using integrated patient similarity networks

Por Pai, Shraddha, Hui, Shirley, Isserlin, Ruth, Shah, Muhammad A, Kaka, Hussam, Bader, Gary D
Publicado no Mol Syst Biol (2019)

SeqHound: biological sequence and structure database as a platform for bioinformatics research

Por Michalickova, Katerina, Bader, Gary D, Dumontier, Michel, Lieu, Hao, Betel, Doron, Isserlin, Ruth, Hogue, Christopher WV
Publicado em 2002

Structure-Templated Predictions of Novel Protein Interactions from Sequence Information

Por Betel, Doron, Breitkreuz, Kevin E, Isserlin, Ruth, Dewar-Darch, Danielle, Tyers, Mike, Hogue, Christopher W. V
Publicado em 2007

Discovery of Novel Disease-specific and Membrane-associated Candidate Markers in a Mouse Model of Multiple Sclerosis

Por Dagley, Laura F., Croft, Nathan P., Isserlin, Ruth, Olsen, Jonathan B., Fong, Vincent, Emili, Andrew, Purcell, Anthony W.
Publicado em 2014

Systems analysis reveals down-regulation of a network of pro-survival miRNAs drives the apoptotic response in dilated cardiomyopathy

Por Isserlin, Ruth, Merico, Daniele, Wang, Dingyan, Vuckovic, Dajana, Bousette, Nicolas, Gramolini, Anthony O., Bader, Gary D., Emili, Andrew
Publicado no Mol Biosyst (2014)

Integrative Network Analysis of Signaling in Human CD34+ Hematopoietic Progenitor Cells by Global Phosphoproteomic Profiling Using TiO2 Enrichment Combined with 2D LC-MS/MS and Pat...

Por Guo, Hongbo, Isserlin, Ruth, Chen, Xiaoji, Wang, Weijia, Phanse, Sadhna, Zandstra, Peter W., Bader, Gary, Paddison, Patrick, Emili, Andrew
Publicado em 2013

Global phosphoproteomic profiling reveals perturbed signaling in a mouse model of dilated cardiomyopathy

Por Kuzmanov, Uros, Guo, Hongbo, Buchsbaum, Diana, Cosme, Jake, Abbasi, Cynthia, Isserlin, Ruth, Sharma, Parveen, Gramolini, Anthony O., Emili, Andrew
Publicado no Proc Natl Acad Sci U S A (2016)

Exploring targets of TET2-mediated methylation reprogramming as potential discriminators of prostate cancer progression

Por Kamdar, Shivani, Isserlin, Ruth, Van der Kwast, Theodorus, Zlotta, Alexandre R., Bader, Gary D., Fleshner, Neil E., Bapat, Bharati
Publicado no Clin Epigenetics (2019)

Unbiased phosphoproteomic method identifies the initial effects of a methacrylic acid copolymer on macrophages

Por Chamberlain, Michael Dean, Wells, Laura A., Lisovsky, Alexandra, Guo, Hongbo, Isserlin, Ruth, Talior-Volodarsky, Ilana, Mahou, Redouan, Emili, Andrew, Sefton, Michael V.
Publicado no Proc Natl Acad Sci U S A (2015)

Dynamic interplay between locus-specific DNA methylation and hydroxymethylation regulates distinct biological pathways in prostate carcinogenesis

Por Kamdar, Shivani N., Ho, Linh T., Kron, Ken J., Isserlin, Ruth, van der Kwast, Theodorus, Zlotta, Alexandre R., Fleshner, Neil E., Bader, Gary, Bapat, Bharati
Publicado no Clin Epigenetics (2016)

Metabolomic profiling in liver of adiponectin-knockout mice uncovers lysophospholipid metabolism as an important target of adiponectin action

Por Liu, Ying, Sen, Sanjana, Wannaiampikul, Sivaporn, Palanivel, Rengasamy, Hoo, Ruby L. C., Isserlin, Ruth, Bader, Gary D., Tungtrongchitr, Rungsunn, Deshaies, Yves, Xu, Aimin, Sweeney, Gary
Publicado no Biochem J (2015)

Cardioprotective Signature of Short-Term Caloric Restriction

Por Noyan, Hossein, El-Mounayri, Omar, Isserlin, Ruth, Arab, Sara, Momen, Abdul, Cheng, Henry S., Wu, Jun, Afroze, Talat, Li, Ren-Ke, Fish, Jason E., Bader, Gary D., Husain, Mansoor
Publicado no PLoS One (2015)