shinyDepMap, a tool to identify targetable cancer genes and their functional connections from Cancer Dependency Map data

von Shimada, Kenichi, Bachman, John A, Muhlich, Jeremy L, Mitchison, Timothy J
Veröffentlicht in eLife (2021)

Programming biological models in Python using PySB

von Lopez, Carlos F, Muhlich, Jeremy L, Bachman, John A, Sorger, Peter K
Veröffentlicht 2013

Adaptive informatics for multi-factorial and high content biological data

von Millard, Bjorn L, Niepel, Mario, Menden, Michael P, Muhlich, Jeremy L, Sorger, Peter K
Veröffentlicht 2011

Fuzzy Logic Analysis of Kinase Pathway Crosstalk in TNF/EGF/Insulin-Induced Signaling

von Aldridge, Bree B., Saez-Rodriguez, Julio, Muhlich, Jeremy L., Sorger, Peter K., Lauffenburger, Douglas A.
Veröffentlicht 2009

Properties of cell death models calibrated and compared using Bayesian approaches

von Eydgahi, Hoda, Chen, William W, Muhlich, Jeremy L, Vitkup, Dennis, Tsitsiklis, John N, Sorger, Peter K
Veröffentlicht 2013

From word models to executable models of signaling networks using automated assembly

von Gyori, Benjamin M, Bachman, John A, Subramanian, Kartik, Muhlich, Jeremy L, Galescu, Lucian, Sorger, Peter K
Veröffentlicht in Mol Syst Biol (2017)

SYLARAS: A Platform for the Statistical Analysis and Visual Display of Systemic Immunoprofiling Data and Its Application to Glioblastoma

von Baker, Gregory J., Muhlich, Jeremy L., Palaniappan, Sucheendra K., Moore, Jodene K., Davis, Stephanie H., Santagata, Sandro, Sorger, Peter K.
Veröffentlicht in Cell Syst (2020)

Analysis of growth factor signaling in genetically diverse breast cancer lines

von Niepel, Mario, Hafner, Marc, Pace, Emily A, Chung, Mirra, Chai, Diana H, Zhou, Lili, Muhlich, Jeremy L, Schoeberl, Birgit, Sorger, Peter K
Veröffentlicht in BMC Biol (2014)

GRcalculator: an online tool for calculating and mining dose–response data

von Clark, Nicholas A., Hafner, Marc, Kouril, Michal, Williams, Elizabeth H., Muhlich, Jeremy L., Pilarczyk, Marcin, Niepel, Mario, Sorger, Peter K., Medvedovic, Mario
Veröffentlicht in BMC Cancer (2017)

Minerva: a light-weight, narrative image browser for multiplexed tissue images

von Hoffer, John, Rashid, Rumana, Muhlich, Jeremy L., Chen, Yu-An, Russell, Douglas Peter William, Ruokonen, Juha, Krueger, Robert, Pfister, Hanspeter, Santagata, Sandro, Sorger, Peter K.
Veröffentlicht in J Open Source Softw (2020)

A SIMPLE METHOD FOR CREATING A HIGH-CONTENT MICROSCOPE FOR IMAGING MULTIPLEXED TISSUE MICROARRAYS

von Abtahi, Shabnam, Gliksman, Neal R., Heneghan, John F., Nilsen, Steven P., Muhlich, Jeremy L., Copeland, Jay, Rozbicki, Emil, Allan, Chris, Dudeja, Pradeep K., Turner, Jerrold R.
Veröffentlicht in Curr Protoc (2021)

A Quantitative Approach to Screen for Nephrotoxic Compounds In Vitro

von Adler, Melanie, Ramm, Susanne, Hafner, Marc, Muhlich, Jeremy L., Gottwald, Esther Maria, Weber, Elijah, Jaklic, Alenka, Ajay, Amrendra Kumar, Svoboda, Daniel, Auerbach, Scott, Kelly, Edward J., Himmelfarb, Jonathan, Vaidya, Vishal S.
Veröffentlicht in J Am Soc Nephrol (2016)

Screensaver: an open source lab information management system (LIMS) for high throughput screening facilities

von Tolopko, Andrew N, Sullivan, John P, Erickson, Sean D, Wrobel, David, Chiang, Su L, Rudnicki, Katrina, Rudnicki, Stewart, Nale, Jennifer, Selfors, Laura M, Greenhouse, Dara, Muhlich, Jeremy L, Shamu, Caroline E
Veröffentlicht 2010

LINCS Canvas Browser: interactive web app to query, browse and interrogate LINCS L1000 gene expression signatures

von Duan, Qiaonan, Flynn, Corey, Niepel, Mario, Hafner, Marc, Muhlich, Jeremy L., Fernandez, Nicolas F., Rouillard, Andrew D., Tan, Christopher M., Chen, Edward Y., Golub, Todd R., Sorger, Peter K., Subramanian, Aravind, Ma'ayan, Avi
Veröffentlicht 2014

The Library of Integrated Network-based Cellular Signatures (LINCS) NIH Program: System-level Cataloging of Human Cells Response to Perturbations

von Keenan, Alexandra B., Jenkins, Sherry L., Jagodnik, Kathleen M., Koplev, Simon, He, Edward, Torre, Denis, Wang, Zichen, Dohlman, Anders B., Silverstein, Moshe C., Lachmann, Alexander, Kuleshov, Maxim V., Ma’ayan, Avi, Stathias, Vasileios, Terryn, Raymond, Cooper, Daniel, Forlin, Michele, Koleti, Amar, Vidovic, Dusica, Chung, Caty, Schürer, Stephan C., Vasiliauskas, Jouzas, Pilarczyk, Marcin, Shamsaei, Behrouz, Fazel, Mehdi, Ren, Yan, Niu, Wen, Clark, Nicholas A., White, Shana, Mahi, Naim, Zhang, Lixia, Kouril, Michal, Reichard, John F., Sivaganesan, Siva, Medvedovic, Mario, Meller, Jaroslaw, Koch, Rick J., Birtwistle, Marc R., Iyengar, Ravi, Sobie, Eric A., Azeloglu, Evren, Kaye, Julia, Osterloh, Jeannette, Haston, Kelly, Kalra, Jaslin, Finkbiener, Steve M., Li, Jonathan, Milani, Pamela, Adam, Miriam, Escalante, Renan, Sachs, Karen, Lenail, Alex, Ramamoorthy, Divya, Fraenkel, Ernest, Daigle, Gavin, Hussain, Uzma, Coye, Alyssa, Rothstein, Jeffrey, Sareen, Dhruv, Ornelas, Loren, Banuelos, Maria, Mandefro, Berhan, Ho, Ritchie, Svendsen, Clive N., Lim, Ryan, Stocksdale, Jennifer, Casale, Malcolm, Thompson, Terri, Wu, Jenny, Thompson, Leslie M., Dardov, Victoria, Venkatraman, Vidya, Matlock, Andrea, Van Eyk, Jenny, Jaffe, Jacob D., Papanastasiou, Malvina, Subramanian, Aravind, Golub, Todd R., Erickson, Sean D., Fallahi-Sichani, Mohammad, Hafner, Marc, Gray, Nathanael S., Lin, Jia-Ren, Mills, Caitlin E., Muhlich, Jeremy L., Niepel, Mario, Shamu, Caroline E., Williams, Elizabeth H., Wrobel, David, Sorger, Peter K., Heiser, Laura M., Gray, Joe W., Korkola, James E., Mills, Gordon B., LaBarge, Mark, Feiler, Heidi S., Dane, Mark A., Bucher, Elmar, Nederlof, Michel, Sudar, Damir, Gross, Sean, Kilburn, David F., Smith, Rebecca, Devlin, Kaylyn, Margolis, Ron, Derr, Leslie, Lee, Albert, Pilai, Ajay
Veröffentlicht in Cell Syst (2017)