Mechanical regulation of fibroblast migration and collagen remodelling in healing myocardial infarcts

od Rouillard, Andrew D, Holmes, Jeffrey W
Izdano 2012

Mechanical Boundary Conditions Bias Fibroblast Invasion in a Collagen-Fibrin Wound Model

od Rouillard, Andrew D., Holmes, Jeffrey W.
Izdano 2014

ABSTRACTION FOR DATA INTEGRATION: FUSING MAMMALIAN MOLECULAR, CELLULAR AND PHENOTYPE BIG DATASETS FOR BETTER KNOWLEDGE EXTRACTION

od Rouillard, Andrew D., Wang, Zichen, Ma’ayan, Avi
izdano v Comput Biol Chem (2015)

Systematic interrogation of diverse Omic data reveals interpretable, robust, and generalizable transcriptomic features of clinically successful therapeutic targets

od Rouillard, Andrew D., Hurle, Mark R., Agarwal, Pankaj
izdano v PLoS Comput Biol (2018)

Regional Mechanics Determine Collagen Fiber Structure in Healing Myocardial Infarcts

od Fomovsky, Gregory M., Rouillard, Andrew D., Holmes, Jeffrey W.
Izdano 2012

Lean Big Data Integration in Systems Biology and Systems Pharmacology

od Ma’ayan, Avi, Rouillard, Andrew D., Clark, Neil R., Wang, Zichen, Duan, Qiaonan, Kou, Yan
Izdano 2014

Drug/Cell-line Browser: interactive canvas visualization of cancer drug/cell-line viability assay datasets

od Duan, Qiaonan, Wang, Zichen, Fernandez, Nicolas F., Rouillard, Andrew D., Tan, Christopher M., Benes, Cyril H., Ma’ayan, Avi
izdano v Bioinformatics (2014)

GEO2Enrichr: browser extension and server app to extract gene sets from GEO and analyze them for biological functions

od Gundersen, Gregory W., Jones, Matthew R., Rouillard, Andrew D., Kou, Yan, Monteiro, Caroline D., Feldmann, Axel S., Hu, Kevin S., Ma’ayan, Avi
izdano v Bioinformatics (2015)

The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins

od Rouillard, Andrew D., Gundersen, Gregory W., Fernandez, Nicolas F., Wang, Zichen, Monteiro, Caroline D., McDermott, Michael G., Ma’ayan, Avi
izdano v Database (Oxford) (2016)

LINCS Canvas Browser: interactive web app to query, browse and interrogate LINCS L1000 gene expression signatures

od Duan, Qiaonan, Flynn, Corey, Niepel, Mario, Hafner, Marc, Muhlich, Jeremy L., Fernandez, Nicolas F., Rouillard, Andrew D., Tan, Christopher M., Chen, Edward Y., Golub, Todd R., Sorger, Peter K., Subramanian, Aravind, Ma'ayan, Avi
Izdano 2014

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

od Kuleshov, Maxim V., Jones, Matthew R., Rouillard, Andrew D., Fernandez, Nicolas F., Duan, Qiaonan, Wang, Zichen, Koplev, Simon, Jenkins, Sherry L., Jagodnik, Kathleen M., Lachmann, Alexander, McDermott, Michael G., Monteiro, Caroline D., Gundersen, Gregory W., Ma'ayan, Avi
izdano v Nucleic Acids Res (2016)

L1000CDS(2): LINCS L1000 characteristic direction signatures search engine

od Duan, Qiaonan, Reid, St Patrick, Clark, Neil R, Wang, Zichen, Fernandez, Nicolas F, Rouillard, Andrew D, Readhead, Ben, Tritsch, Sarah R, Hodos, Rachel, Hafner, Marc, Niepel, Mario, Sorger, Peter K, Dudley, Joel T, Bavari, Sina, Panchal, Rekha G, Ma’ayan, Avi
izdano v NPJ Syst Biol Appl (2016)

Pharos: Collating protein information to shed light on the druggable genome

od Nguyen, Dac-Trung, Mathias, Stephen, Bologa, Cristian, Brunak, Soren, Fernandez, Nicolas, Gaulton, Anna, Hersey, Anne, Holmes, Jayme, Jensen, Lars Juhl, Karlsson, Anneli, Liu, Guixia, Ma'ayan, Avi, Mandava, Geetha, Mani, Subramani, Mehta, Saurabh, Overington, John, Patel, Juhee, Rouillard, Andrew D., Schürer, Stephan, Sheils, Timothy, Simeonov, Anton, Sklar, Larry A., Southall, Noel, Ursu, Oleg, Vidovic, Dusica, Waller, Anna, Yang, Jeremy, Jadhav, Ajit, Oprea, Tudor I., Guha, Rajarshi
izdano v Nucleic Acids Res (2017)

Systems Analysis Implicates WAVE2 Complex in the Pathogenesis of Developmental Left-Sided Obstructive Heart Defects

od Edwards, Jonathan J., Rouillard, Andrew D., Fernandez, Nicolas F., Wang, Zichen, Lachmann, Alexander, Shankaran, Sunita S., Bisgrove, Brent W., Demarest, Bradley, Turan, Nahid, Srivastava, Deepak, Bernstein, Daniel, Deanfield, John, Giardini, Alessandro, Porter, George, Kim, Richard, Roberts, Amy E., Newburger, Jane W., Goldmuntz, Elizabeth, Brueckner, Martina, Lifton, Richard P., Seidman, Christine E., Chung, Wendy K., Tristani-Firouzi, Martin, Yost, H. Joseph, Ma’ayan, Avi, Gelb, Bruce D.
izdano v JACC Basic Transl Sci (2020)

Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd

od Wang, Zichen, Monteiro, Caroline D., Jagodnik, Kathleen M., Fernandez, Nicolas F., Gundersen, Gregory W., Rouillard, Andrew D., Jenkins, Sherry L., Feldmann, Axel S., Hu, Kevin S., McDermott, Michael G., Duan, Qiaonan, Clark, Neil R., Jones, Matthew R., Kou, Yan, Goff, Troy, Woodland, Holly, Amaral, Fabio M R., Szeto, Gregory L., Fuchs, Oliver, Schüssler-Fiorenza Rose, Sophia M., Sharma, Shvetank, Schwartz, Uwe, Bausela, Xabier Bengoetxea, Szymkiewicz, Maciej, Maroulis, Vasileios, Salykin, Anton, Barra, Carolina M., Kruth, Candice D., Bongio, Nicholas J., Mathur, Vaibhav, Todoric, Radmila D, Rubin, Udi E., Malatras, Apostolos, Fulp, Carl T., Galindo, John A., Motiejunaite, Ruta, Jüschke, Christoph, Dishuck, Philip C., Lahl, Katharina, Jafari, Mohieddin, Aibar, Sara, Zaravinos, Apostolos, Steenhuizen, Linda H., Allison, Lindsey R., Gamallo, Pablo, de Andres Segura, Fernando, Dae Devlin, Tyler, Pérez-García, Vicente, Ma'ayan, Avi
izdano v Nat Commun (2016)