Mechanical regulation of fibroblast migration and collagen remodelling in healing myocardial infarcts

Por Rouillard, Andrew D, Holmes, Jeffrey W
Publicado em 2012

Mechanical Boundary Conditions Bias Fibroblast Invasion in a Collagen-Fibrin Wound Model

Por Rouillard, Andrew D., Holmes, Jeffrey W.
Publicado em 2014

ABSTRACTION FOR DATA INTEGRATION: FUSING MAMMALIAN MOLECULAR, CELLULAR AND PHENOTYPE BIG DATASETS FOR BETTER KNOWLEDGE EXTRACTION

Por Rouillard, Andrew D., Wang, Zichen, Ma’ayan, Avi
Publicado no Comput Biol Chem (2015)

Regional Mechanics Determine Collagen Fiber Structure in Healing Myocardial Infarcts

Por Fomovsky, Gregory M., Rouillard, Andrew D., Holmes, Jeffrey W.
Publicado em 2012

Lean Big Data Integration in Systems Biology and Systems Pharmacology

Por Ma’ayan, Avi, Rouillard, Andrew D., Clark, Neil R., Wang, Zichen, Duan, Qiaonan, Kou, Yan
Publicado em 2014

Drug/Cell-line Browser: interactive canvas visualization of cancer drug/cell-line viability assay datasets

Por Duan, Qiaonan, Wang, Zichen, Fernandez, Nicolas F., Rouillard, Andrew D., Tan, Christopher M., Benes, Cyril H., Ma’ayan, Avi
Publicado no Bioinformatics (2014)

GEO2Enrichr: browser extension and server app to extract gene sets from GEO and analyze them for biological functions

Por Gundersen, Gregory W., Jones, Matthew R., Rouillard, Andrew D., Kou, Yan, Monteiro, Caroline D., Feldmann, Axel S., Hu, Kevin S., Ma’ayan, Avi
Publicado no Bioinformatics (2015)

The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins

Por Rouillard, Andrew D., Gundersen, Gregory W., Fernandez, Nicolas F., Wang, Zichen, Monteiro, Caroline D., McDermott, Michael G., Ma’ayan, Avi
Publicado no Database (Oxford) (2016)

LINCS Canvas Browser: interactive web app to query, browse and interrogate LINCS L1000 gene expression signatures

Por Duan, Qiaonan, Flynn, Corey, Niepel, Mario, Hafner, Marc, Muhlich, Jeremy L., Fernandez, Nicolas F., Rouillard, Andrew D., Tan, Christopher M., Chen, Edward Y., Golub, Todd R., Sorger, Peter K., Subramanian, Aravind, Ma'ayan, Avi
Publicado em 2014

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

Por Kuleshov, Maxim V., Jones, Matthew R., Rouillard, Andrew D., Fernandez, Nicolas F., Duan, Qiaonan, Wang, Zichen, Koplev, Simon, Jenkins, Sherry L., Jagodnik, Kathleen M., Lachmann, Alexander, McDermott, Michael G., Monteiro, Caroline D., Gundersen, Gregory W., Ma'ayan, Avi
Publicado no Nucleic Acids Res (2016)

L1000CDS(2): LINCS L1000 characteristic direction signatures search engine

Por Duan, Qiaonan, Reid, St Patrick, Clark, Neil R, Wang, Zichen, Fernandez, Nicolas F, Rouillard, Andrew D, Readhead, Ben, Tritsch, Sarah R, Hodos, Rachel, Hafner, Marc, Niepel, Mario, Sorger, Peter K, Dudley, Joel T, Bavari, Sina, Panchal, Rekha G, Ma’ayan, Avi
Publicado no NPJ Syst Biol Appl (2016)

Pharos: Collating protein information to shed light on the druggable genome

Por Nguyen, Dac-Trung, Mathias, Stephen, Bologa, Cristian, Brunak, Soren, Fernandez, Nicolas, Gaulton, Anna, Hersey, Anne, Holmes, Jayme, Jensen, Lars Juhl, Karlsson, Anneli, Liu, Guixia, Ma'ayan, Avi, Mandava, Geetha, Mani, Subramani, Mehta, Saurabh, Overington, John, Patel, Juhee, Rouillard, Andrew D., Schürer, Stephan, Sheils, Timothy, Simeonov, Anton, Sklar, Larry A., Southall, Noel, Ursu, Oleg, Vidovic, Dusica, Waller, Anna, Yang, Jeremy, Jadhav, Ajit, Oprea, Tudor I., Guha, Rajarshi
Publicado no Nucleic Acids Res (2017)

Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd

Por Wang, Zichen, Monteiro, Caroline D., Jagodnik, Kathleen M., Fernandez, Nicolas F., Gundersen, Gregory W., Rouillard, Andrew D., Jenkins, Sherry L., Feldmann, Axel S., Hu, Kevin S., McDermott, Michael G., Duan, Qiaonan, Clark, Neil R., Jones, Matthew R., Kou, Yan, Goff, Troy, Woodland, Holly, Amaral, Fabio M R., Szeto, Gregory L., Fuchs, Oliver, Schüssler-Fiorenza Rose, Sophia M., Sharma, Shvetank, Schwartz, Uwe, Bausela, Xabier Bengoetxea, Szymkiewicz, Maciej, Maroulis, Vasileios, Salykin, Anton, Barra, Carolina M., Kruth, Candice D., Bongio, Nicholas J., Mathur, Vaibhav, Todoric, Radmila D, Rubin, Udi E., Malatras, Apostolos, Fulp, Carl T., Galindo, John A., Motiejunaite, Ruta, Jüschke, Christoph, Dishuck, Philip C., Lahl, Katharina, Jafari, Mohieddin, Aibar, Sara, Zaravinos, Apostolos, Steenhuizen, Linda H., Allison, Lindsey R., Gamallo, Pablo, de Andres Segura, Fernando, Dae Devlin, Tyler, Pérez-García, Vicente, Ma'ayan, Avi
Publicado no Nat Commun (2016)