Introduction to Statistical Methods to Analyze Large Data Sets: Principal Components Analysis

nork Clark, Neil R., Ma’ayan, Avi
Argitaratua 2011

Introduction to Statistical Methods for Analyzing Large Data Sets: Gene-Set Enrichment Analysis

nork Clark, Neil R., Ma’ayan, Avi
Argitaratua 2011

Genes2FANs: connecting genes through functional association networks

nork Dannenfelser, Ruth, Clark, Neil R, Ma'ayan, Avi
Argitaratua 2012

Dynamics of the discovery process of protein-protein interactions from low content studies

nork Wang, Zichen, Clark, Neil R., Ma’ayan, Avi
Argitaratua izan da BMC Syst Biol (2015)

Drug-induced adverse events prediction with the LINCS L1000 data

nork Wang, Zichen, Clark, Neil R., Ma’ayan, Avi
Argitaratua izan da Bioinformatics (2016)

Sets2Networks: network inference from repeated observations of sets

nork Clark, Neil R, Dannenfelser, Ruth, Tan, Christopher M, Komosinski, Michael E, Ma'ayan, Avi
Argitaratua 2012

Network2Canvas: network visualization on a canvas with enrichment analysis

nork Tan, Christopher M., Chen, Edward Y., Dannenfelser, Ruth, Clark, Neil R., Ma’ayan, Avi
Argitaratua 2013

Lean Big Data Integration in Systems Biology and Systems Pharmacology

nork Ma’ayan, Avi, Rouillard, Andrew D., Clark, Neil R., Wang, Zichen, Duan, Qiaonan, Kou, Yan
Argitaratua 2014

Principal Angle Enrichment Analysis (PAEA): Dimensionally Reduced Multivariate Gene Set Enrichment Analysis Tool

nork Clark, Neil R., Szymkiewicz, Maciej, Wang, Zichen, Monteiro, Caroline D., Jones, Matthew R., Ma’ayan, Avi
Argitaratua izan da Proceedings (IEEE Int Conf Bioinformatics Biomed) (2015)

The characteristic direction: a geometrical approach to identify differentially expressed genes

nork Clark, Neil R, Hu, Kevin S, Feldmann, Axel S, Kou, Yan, Chen, Edward Y, Duan, Qiaonan, Ma’ayan, Avi
Argitaratua 2014

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

nork Chen, Edward Y, Tan, Christopher M, Kou, Yan, Duan, Qiaonan, Wang, Zichen, Meirelles, Gabriela Vaz, Clark, Neil R, Ma’ayan, Avi
Argitaratua 2013

Scaffold hopping approach on the route to selective tankyrase inhibitors

nork Liscio, Paride, Carotti, Andrea, Asciutti, Stefania, Ferri, Martina, Pires, Maira M., Valloscuro, Sara, Ziff, Jacob, Clark, Neil R., Macchiarulo, Antonio, Aaronson, Stuart A., Pellicciari, Roberto, Camaioni, Emidio
Argitaratua izan da Eur J Med Chem (2014)

Cell-specific prediction and application of drug-induced gene expression profiles

nork Hodos, Rachel, Zhang, Ping, Lee, Hao-Chih, Duan, Qiaonan, Wang, Zichen, Clark, Neil R., Ma'ayan, Avi, Wang, Fei, Kidd, Brian, Hu, Jianying, Sontag, David, Dudley, Joel
Argitaratua izan da Pac Symp Biocomput (2018)

Glucocorticoid receptor isoforms direct distinct mitochondrial programs to regulate ATP production

nork Morgan, David J., Poolman, Toryn M., Williamson, Andrew J. K., Wang, Zichen, Clark, Neil R., Ma’ayan, Avi, Whetton, Anthony D., Brass, Andrew, Matthews, Laura C., Ray, David W.
Argitaratua izan da Sci Rep (2016)

Renoprotective Effect of Combined Inhibition of Angiotensin-Converting Enzyme and Histone Deacetylase

nork Zhong, Yifei, Chen, Edward Y., Liu, Ruijie, Chuang, Peter Y., Mallipattu, Sandeep K., Tan, Christopher M., Clark, Neil R., Deng, Yueyi, Klotman, Paul E., Ma’ayan, Avi, He, John Cijiang
Argitaratua 2013

Integration of protein phosphorylation, acetylation, and methylation datasets to outline lung cancer signaling networks

nork Grimes, Mark, Hall, Benjamin, Foltz, Lauren, Levy, Tyler, Rikova, Klarisa, Gaiser, Jeremiah, Cook, William, Smirnova, Ekaterina, Wheeler, Travis, Clark, Neil R., Lachmann, Alexander, Zhang, Bin, Hornbeck, Peter, Ma’ayan, Avi, Comb, Michael
Argitaratua izan da Sci Signal (2018)

Induction of a Hemogenic Program in Mouse Fibroblasts

nork Pereira, Carlos-Filipe, Chang, Betty, Qiu, Jiajing, Niu, Xiaohong, Papatsenko, Dmitri, Hendry, Caroline E., Clark, Neil R., Nomura-Kitabayashi, Aya, Kovacic, Jason C., Ma’ayan, Avi, Schaniel, Christoph, Lemischka, Ihor R., Moore, Kateri
Argitaratua 2013

Recovering Protein-Protein and Domain-Domain Interactions from Aggregation of IP-MS Proteomics of Coregulator Complexes

nork Mazloom, Amin R., Dannenfelser, Ruth, Clark, Neil R., Grigoryan, Arsen V., Linder, Kathryn M., Cardozo, Timothy J., Bond, Julia C., Boran, Aislyn D. W., Iyengar, Ravi, Malovannaya, Anna, Lanz, Rainer B., Ma'ayan, Avi
Argitaratua 2011

Proteomics Analysis of the Non-Muscle Myosin Heavy Chain IIa-Enriched Actin-Myosin Complex Reveals Multiple Functions within the Podocyte

nork Hays, Thomas, Ma’ayan, Avi, Clark, Neil R., Tan, Christopher M., Teixeira, Avelino, Teixeira, Angela, Choi, Jae W., Burdis, Nora, Jung, Sung Yun, Bajaj, Amol O., O’Malley, Bert W., He, John C., Hyink, Deborah P., Klotman, Paul E.
Argitaratua 2014

L1000CDS(2): LINCS L1000 characteristic direction signatures search engine

nork Duan, Qiaonan, Reid, St Patrick, Clark, Neil R, Wang, Zichen, Fernandez, Nicolas F, Rouillard, Andrew D, Readhead, Ben, Tritsch, Sarah R, Hodos, Rachel, Hafner, Marc, Niepel, Mario, Sorger, Peter K, Dudley, Joel T, Bavari, Sina, Panchal, Rekha G, Ma’ayan, Avi
Argitaratua izan da NPJ Syst Biol Appl (2016)