Splice-Aware Multiple Sequence Alignment of Protein Isoforms

per Nord, Alex, Carey, Kaitlin, Hornbeck, Peter, Wheeler, Travis
Publicat a ACM BCB (2018)

Systematic analysis of the intersection of disease mutations with protein modifications

per Simpson, Claire M., Zhang, Bin, Hornbeck, Peter V., Gnad, Florian
Publicat a BMC Med Genomics (2019)

Signatures of Natural Selection on Mutations of Residues with Multiple Posttranslational Modifications

per Gray, Vanessa E., Liu, Li, Nirankari, Ronika, Hornbeck, Peter V., Kumar, Sudhir
Publicat 2014

Profiling post-translational modifications of proteins that regulate gene expression

per Hornbeck, Peter, Skrzypek, Ela, Zhang, Bin, Kornhauser, Jon, Tkachev, Sasha, Murray, Beth, Latham, Vaughan
Publicat 2010

PhosphoSitePlus, 2014: mutations, PTMs and recalibrations

per Hornbeck, Peter V., Zhang, Bin, Murray, Beth, Kornhauser, Jon M., Latham, Vaughan, Skrzypek, Elzbieta
Publicat a Nucleic Acids Res (2014)

PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse

per Hornbeck, Peter V., Kornhauser, Jon M., Tkachev, Sasha, Zhang, Bin, Skrzypek, Elżbieta, Murray, Beth, Latham, Vaughan, Sullivan, Michael
Publicat 2012

Clustergrammer, a web-based heatmap visualization and analysis tool for high-dimensional biological data

per Fernandez, Nicolas F., Gundersen, Gregory W., Rahman, Adeeb, Grimes, Mark L., Rikova, Klarisa, Hornbeck, Peter, Ma’ayan, Avi
Publicat a Sci Data (2017)

15 years of PhosphoSitePlus(®): integrating post-translationally modified sites, disease variants and isoforms

per Hornbeck, Peter V, Kornhauser, Jon M, Latham, Vaughan, Murray, Beth, Nandhikonda, Vidhisha, Nord, Alex, Skrzypek, Elżbieta, Wheeler, Travis, Zhang, Bin, Gnad, Florian
Publicat a Nucleic Acids Res (2019)

Reciprocal regulation of Abl kinase by Crk Y251 and Abi1 controls invasive phenotypes in glioblastoma

per Kumar, Sushil, Lu, Bin, Dixit, Updesh, Hossain, Sajjad, Liu, Yongzhang, Li, Jing, Hornbeck, Peter, Zheng, Weiming, Sowalsky, Adam G., Kotula, Leszek, Birge, Raymond B.
Publicat a Oncotarget (2015)

Iterative Tyrosine Phosphorylation Controls Non-canonical Domain Utilization in Crk

per Sriram, Ganapathy, Jankowski, Wojciech, Kasikara, Canan, Reichman, Charles, Saleh, Tamjeed, Nguyen, Khanh-Quynh, Li, Jing, Hornbeck, Peter, Machida, Kazuya, Liu, Tong, Li, Hong, Kalodimos, Charalampos G., Birge, Raymond B.
Publicat a Oncogene (2014)

Integration of protein phosphorylation, acetylation, and methylation datasets to outline lung cancer signaling networks

per Grimes, Mark, Hall, Benjamin, Foltz, Lauren, Levy, Tyler, Rikova, Klarisa, Gaiser, Jeremiah, Cook, William, Smirnova, Ekaterina, Wheeler, Travis, Clark, Neil R., Lachmann, Alexander, Zhang, Bin, Hornbeck, Peter, Ma’ayan, Avi, Comb, Michael
Publicat a Sci Signal (2018)

Akt-RSK-S6-kinase Signaling Networks Activated by Oncogenic Receptor Tyrosine Kinases

per Moritz, Albrecht, Li, Yu, Guo, Ailan, Villén, Judit, Wang, Yi, MacNeill, Joan, Kornhauser, Jon, Sprott, Kam, Zhou, Jing, Possemato, Anthony, Ren, Jian Min, Hornbeck, Peter, Cantley, Lewis C., Gygi, Steven P., Rush, John, Comb, Michael J.
Publicat 2010

A Curated Resource for Phosphosite-specific Signature Analysis

per Krug, Karsten, Mertins, Philipp, Zhang, Bin, Hornbeck, Peter, Raju, Rajesh, Ahmad, Rushdy, Szucs, Matthew, Mundt, Filip, Forestier, Dominique, Jane-Valbuena, Judit, Keshishian, Hasmik, Gillette, Michael A., Tamayo, Pablo, Mesirov, Jill P., Jaffe, Jacob D., Carr, Steven A., Mani, D. R.
Publicat a Mol Cell Proteomics (2019)

The FDA-approved drug Alectinib compromises SARS-CoV-2 nucleocapsid phosphorylation and inhibits viral infection in vitro

per Yaron, Tomer M, Heaton, Brook E, Levy, Tyler M, Johnson, Jared L, Jordan, Tristan X, Cohen, Benjamin M, Kerelsky, Alexander, Lin, Ting-Yu, Liberatore, Katarina M, Bulaon, Danielle K, Kastenhuber, Edward R, Mercadante, Marisa N, Shobana-Ganesh, Kripa, He, Long, Schwartz, Robert E, Chen, Shuibing, Weinstein, Harel, Elemento, Oliver, Piskounova, Elena, Nilsson-Payant, Benjamin E, Lee, Gina, Trimarco, Joseph D, Burke, Kaitlyn N, Hamele, Cait E, Chaparian, Ryan R, Harding, Alfred T, Tata, Aleksandra, Zhu, Xinyu, Tata, Purushothama Rao, Smith, Clare M, Possemato, Anthony P, Tkachev, Sasha L, Hornbeck, Peter V, Beausoleil, Sean A, Anand, Shankara K, Aguet, François, Getz, Gad, Davidson, Andrew D, Heesom, Kate, Kavanagh-Williamson, Maia, Matthews, David, tenOever, Benjamin R, Cantley, Lewis C, Blenis, John, Heaton, Nicholas S
Publicat a bioRxiv (2020)

BioPAX – A community standard for pathway data sharing

per Demir, Emek, Cary, Michael P., Paley, Suzanne, Fukuda, Ken, Lemer, Christian, Vastrik, Imre, Wu, Guanming, D’Eustachio, Peter, Schaefer, Carl, Luciano, Joanne, Schacherer, Frank, Martinez-Flores, Irma, Hu, Zhenjun, Jimenez-Jacinto, Veronica, Joshi-Tope, Geeta, Kandasamy, Kumaran, Lopez-Fuentes, Alejandra C., Mi, Huaiyu, Pichler, Elgar, Rodchenkov, Igor, Splendiani, Andrea, Tkachev, Sasha, Zucker, Jeremy, Gopinath, Gopal, Rajasimha, Harsha, Ramakrishnan, Ranjani, Shah, Imran, Syed, Mustafa, Anwar, Nadia, Babur, Ozgun, Blinov, Michael, Brauner, Erik, Corwin, Dan, Donaldson, Sylva, Gibbons, Frank, Goldberg, Robert, Hornbeck, Peter, Luna, Augustin, Murray-Rust, Peter, Neumann, Eric, Reubenacker, Oliver, Samwald, Matthias, van Iersel, Martijn, Wimalaratne, Sarala, Allen, Keith, Braun, Burk, Whirl-Carrillo, Michelle, Dahlquist, Kam, Finney, Andrew, Gillespie, Marc, Glass, Elizabeth, Gong, Li, Haw, Robin, Honig, Michael, Hubaut, Olivier, Kane, David, Krupa, Shiva, Kutmon, Martina, Leonard, Julie, Marks, Debbie, Merberg, David, Petri, Victoria, Pico, Alex, Ravenscroft, Dean, Ren, Liya, Shah, Nigam, Sunshine, Margot, Tang, Rebecca, Whaley, Ryan, Letovksy, Stan, Buetow, Kenneth H., Rzhetsky, Andrey, Schachter, Vincent, Sobral, Bruno S., Dogrusoz, Ugur, McWeeney, Shannon, Aladjem, Mirit, Birney, Ewan, Collado-Vides, Julio, Goto, Susumu, Hucka, Michael, Le Novère, Nicolas, Maltsev, Natalia, Pandey, Akhilesh, Thomas, Paul, Wingender, Edgar, Karp, Peter D., Sander, Chris, Bader, Gary D.
Publicat 2010