Network2Canvas: network visualization on a canvas with enrichment analysis

per Tan, Christopher M., Chen, Edward Y., Dannenfelser, Ruth, Clark, Neil R., Ma’ayan, Avi
Publicat 2013

Expression2Kinases: mRNA profiling linked to multiple upstream regulatory layers

per Chen, Edward Y., Xu, Huilei, Gordonov, Simon, Lim, Maribel P., Perkins, Matthew H., Ma'ayan, Avi
Publicat 2012

The characteristic direction: a geometrical approach to identify differentially expressed genes

per Clark, Neil R, Hu, Kevin S, Feldmann, Axel S, Kou, Yan, Chen, Edward Y, Duan, Qiaonan, Ma’ayan, Avi
Publicat 2014

NetworkPainter: dynamic intracellular pathway animation in Cytobank

per Karr, Jonathan R, Guturu, Harendra, Chen, Edward Y, Blair, Stuart L, Irish, Jonathan M, Kotecha, Nikesh, Covert, Markus W
Publicat a BMC Bioinformatics (2015)

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

per Chen, Edward Y, Tan, Christopher M, Kou, Yan, Duan, Qiaonan, Wang, Zichen, Meirelles, Gabriela Vaz, Clark, Neil R, Ma’ayan, Avi
Publicat 2013

ESCAPE: database for integrating high-content published data collected from human and mouse embryonic stem cells

per Xu, Huilei, Baroukh, Caroline, Dannenfelser, Ruth, Chen, Edward Y., Tan, Christopher M., Kou, Yan, Kim, Yujin E., Lemischka, Ihor R., Ma'ayan, Avi
Publicat 2013

Transforming Growth Factor β Signaling Controls Activities of Human Intestinal CD8(+)T Suppressor Cells

per RABINOWITZ, KEREN M., WANG, YUANYUAN, CHEN, EDWARD Y., HOVHANNISYAN, ZARA, CHIANG, DAVID, BERIN, M. CECILIA, DAHAN, STEPHANIE, CHAUSSABEL, DAMIEN, MA’AYAN, AVI, MAYER, LLOYD
Publicat 2012

B-myb is an essential regulator of hematopoietic stem cell and myeloid progenitor cell development

per Baker, Stacey J., Ma’ayan, Avi, Lieu, Yen K., John, Premila, Reddy, M. V. Ramana, Chen, Edward Y., Duan, Qiaonan, Snoeck, Hans-Willem, Reddy, E. Premkumar
Publicat 2014

Renoprotective Effect of Combined Inhibition of Angiotensin-Converting Enzyme and Histone Deacetylase

per Zhong, Yifei, Chen, Edward Y., Liu, Ruijie, Chuang, Peter Y., Mallipattu, Sandeep K., Tan, Christopher M., Clark, Neil R., Deng, Yueyi, Klotman, Paul E., Ma’ayan, Avi, He, John Cijiang
Publicat 2013

Systems approach identifies HIPK2 as a critical regulator of kidney fibrosis

per Jin, Yuanmeng, Ratnam, Krishna, Chuang, Peter Y., Fan, Ying, Zhong, Yifei, Dai, Yan, Mazloom, Amin, Chen, Edward Y., D'Agati, Vivette, Xiong, Huabao, Ross, Michael, Chen, Nan, Ma'ayan, Avi, He, John Cijiang
Publicat 2012

LINCS Canvas Browser: interactive web app to query, browse and interrogate LINCS L1000 gene expression signatures

per Duan, Qiaonan, Flynn, Corey, Niepel, Mario, Hafner, Marc, Muhlich, Jeremy L., Fernandez, Nicolas F., Rouillard, Andrew D., Tan, Christopher M., Chen, Edward Y., Golub, Todd R., Sorger, Peter K., Subramanian, Aravind, Ma'ayan, Avi
Publicat 2014

Krüppel-like factor 6 regulates mitochondrial function in the kidney

per Mallipattu, Sandeep K., Horne, Sylvia J., D’Agati, Vivette, Narla, Goutham, Liu, Ruijie, Frohman, Michael A., Dickman, Kathleen, Chen, Edward Y., Ma’ayan, Avi, Bialkowska, Agnieszka B., Ghaleb, Amr M., Nandan, Mandayam O., Jain, Mukesh K., Daehn, Ilse, Chuang, Peter Y., Yang, Vincent W., He, John C.
Publicat a J Clin Invest (2015)

An Esrrb and Nanog Cell Fate Regulatory Module Controlled by Feed Forward Loop Interactions

per Sevilla, Ana, Papatsenko, Dimitri, Mazloom, Amin R., Xu, Huilei, Vasileva, Ana, Unwin, Richard D., LeRoy, Gary, Chen, Edward Y., Garrett-Bakelman, Francine E., Lee, Dung-Fang, Trinite, Benjamin, Webb, Ryan L., Wang, Zichen, Su, Jie, Gingold, Julian, Melnick, Ari, Garcia, Benjamin A., Whetton, Anthony D., MacArthur, Ben D., Ma’ayan, Avi, Lemischka, Ihor R.
Publicat a Front Cell Dev Biol (2021)

Activation of tumor suppressor protein PP2A inhibits KRAS-driven tumor growth

per Sangodkar, Jaya, Perl, Abbey, Tohme, Rita, Kiselar, Janna, Kastrinsky, David B., Zaware, Nilesh, Izadmehr, Sudeh, Mazhar, Sahar, Wiredja, Danica D., O’Connor, Caitlin M., Hoon, Divya, Dhawan, Neil S., Schlatzer, Daniela, Yao, Shen, Leonard, Daniel, Borczuk, Alain C., Gokulrangan, Giridharan, Wang, Lifu, Svenson, Elena, Farrington, Caroline C., Yuan, Eric, Avelar, Rita A., Stachnik, Agnes, Smith, Blake, Gidwani, Vickram, Giannini, Heather M., McQuaid, Daniel, McClinch, Kimberly, Wang, Zhizhi, Levine, Alice C., Sears, Rosalie C., Chen, Edward Y., Duan, Qiaonan, Datt, Manish, Haider, Shozeb, Ma’ayan, Avi, DiFeo, Analisa, Sharma, Neelesh, Galsky, Matthew D., Brautigan, David L., Ioannou, Yiannis A., Xu, Wenqing, Chance, Mark R., Ohlmeyer, Michael, Narla, Goutham
Publicat a J Clin Invest (2017)