High-throughput characterization of protein–RNA interactions

Por Cook, Kate B., Hughes, Timothy R., Morris, Quaid D.
Publicado no Brief Funct Genomics (2015)

Finding the target sites of RNA-binding proteins

Por Li, Xiao, Kazan, Hilal, Lipshitz, Howard D, Morris, Quaid D
Publicado no Wiley Interdiscip Rev RNA (2014)

RNAcompete methodology and application to determine sequence preferences of unconventional RNA-binding proteins

Por Ray, Debashish, Ha, Kevin C.H., Nie, Kate, Zheng, Hong, Hughes, Timothy R., Morris, Quaid D.
Publicado no Methods (2016)

Detection and discovery of RNA modifications using microarrays

Por Hiley, Shawna L., Jackman, Jane, Babak, Tomas, Trochesset, Miles, Morris, Quaid D., Phizicky, Eric, Hughes, Timothy R.
Publicado em 2005

ISOpureR: an R implementation of a computational purification algorithm of mixed tumour profiles

Por Anghel, Catalina V, Quon, Gerald, Haider, Syed, Nguyen, Francis, Deshwar, Amit G, Morris, Quaid D, Boutros, Paul C
Publicado no BMC Bioinformatics (2015)

Genome-wide analysis of Staufen-associated mRNAs identifies secondary structures that confer target specificity

Por Laver, John D., Li, Xiao, Ancevicius, Kristin, Westwood, J. Timothy, Smibert, Craig A., Morris, Quaid D., Lipshitz, Howard D.
Publicado em 2013

A unified model for yeast transcript definition

Por de Boer, Carl G., van Bakel, Harm, Tsui, Kyle, Li, Joyce, Morris, Quaid D., Nislow, Corey, Greenblatt, Jack F., Hughes, Timothy R.
Publicado em 2014

Identifying transcription factor functions and targets by phenotypic activation

Por Chua, Gordon, Morris, Quaid D., Sopko, Richelle, Robinson, Mark D., Ryan, Owen, Chan, Esther T., Frey, Brendan J., Andrews, Brenda J., Boone, Charles, Hughes, Timothy R.
Publicado em 2006

Oncogenic activation of the RNA binding protein NELFE and MYC signaling in hepatocellular carcinoma

Por Dang, Hien, Takai, Atsushi, Forgues, Marshonna, Pomyen, Yotsowat, Mou, Haiwei, Xue, Wen, Ray, Debashish, Ha, Kevin C. H., Morris, Quaid D., Hughes, Timothy R., Wang, Xin Wei
Publicado no Cancer Cell (2017)

Predicting the binding preference of transcription factors to individual DNA k-mers

Por Alleyne, Trevis M., Peña-Castillo, Lourdes, Badis, Gwenael, Talukder, Shaheynoor, Berger, Michael F., Gehrke, Andrew R., Philippakis, Anthony A., Bulyk, Martha L., Morris, Quaid D., Hughes, Timothy R.
Publicado em 2009

Conservation of core gene expression in vertebrate tissues

Por Chan, Esther T, Quon, Gerald T, Chua, Gordon, Babak, Tomas, Trochesset, Miles, Zirngibl, Ralph A, Aubin, Jane, Ratcliffe, Michael JH, Wilde, Andrew, Brudno, Michael, Morris, Quaid D, Hughes, Timothy R
Publicado em 2009

Evaluation of methods for modeling transcription-factor sequence specificity

Por Weirauch, Matthew T., Cote, Atina, Norel, Raquel, Annala, Matti, Zhao, Yue, Riley, Todd R., Saez-Rodriguez, Julio, Cokelaer, Thomas, Vedenko, Anastasia, Talukder, Shaheynoor, Bussemaker, Harmen J., Morris, Quaid D., Bulyk, Martha L., Stolovitzky, Gustavo, Hughes, Timothy R.
Publicado em 2013

Variation in homeodomain DNA-binding revealed by high-resolution analysis of sequence preferences

Por Berger, Michael F., Badis, Gwenael, Gehrke, Andrew R., Talukder, Shaheynoor, Philippakis, Anthony A., Peña-Castillo, Lourdes, Alleyne, Trevis M., Mnaimneh, Sanie, Botvinnik, Olga B., Chan, Esther T., Khalid, Faiqua, Zhang, Wen, Newburger, Daniel, Jaeger, Savina, Morris, Quaid D., Bulyk, Martha L., Hughes, Timothy R.
Publicado em 2008

The functional landscape of mouse gene expression

Por Zhang, Wen, Morris, Quaid D, Chang, Richard, Shai, Ofer, Bakowski, Malina A, Mitsakakis, Nicholas, Mohammad, Naveed, Robinson, Mark D, Zirngibl, Ralph, Somogyi, Eszter, Laurin, Nancy, Eftekharpour, Eftekhar, Sat, Eric, Grigull, Jörg, Pan, Qun, Peng, Wen-Tao, Krogan, Nevan, Greenblatt, Jack, Fehlings, Michael, van der Kooy, Derek, Aubin, Jane, Bruneau, Benoit G, Rossant, Janet, Blencowe, Benjamin J, Frey, Brendan J, Hughes, Timothy R
Publicado em 2004

A compendium of RNA-binding motifs for decoding gene regulation

Por Ray, Debashish, Kazan, Hilal, Cook, Kate B., Weirauch, Matthew T., Najafabadi, Hamed S., Li, Xiao, Gueroussov, Serge, Albu, Mihai, Zheng, Hong, Yang, Ally, Na, Hong, Irimia, Manuel, Matzat, Leah H., Dale, Ryan K., Smith, Sarah A., Yarosh, Christopher A., Kelly, Seth M., Nabet, Behnam, Mecenas, Desirea, Li, Weimin, Laishram, Rakesh S., Qiao, Mei, Lipshitz, Howard D., Piano, Fabio, Corbett, Anita H., Carstens, Russ P., Frey, Brendan J., Anderson, Richard A., Lynch, Kristen W., Penalva, Luiz O. F., Lei, Elissa P., Fraser, Andrew G., Blencowe, Benjamin J., Morris, Quaid D., Hughes, Timothy R.
Publicado em 2013

The Genetic Landscape of a Cell

Por Costanzo, Michael, Baryshnikova, Anastasia, Bellay, Jeremy, Kim, Yungil, Spear, Eric D., Sevier, Carolyn S., Ding, Huiming, Koh, Judice L.Y., Toufighi, Kiana, Mostafavi, Sara, Prinz, Jeany, St. Onge, Robert P., VanderSluis, Benjamin, Makhnevych, Taras, Vizeacoumar, Franco J., Alizadeh, Solmaz, Bahr, Sondra, Brost, Renee L., Chen, Yiqun, Cokol, Murat, Deshpande, Raamesh, Li, Zhijian, Lin, Zhen-Yuan, Liang, Wendy, Marback, Michaela, Paw, Jadine, San Luis, Bryan-Joseph, Shuteriqi, Ermira, Hin Yan Tong, Amy, van Dyk, Nydia, Wallace, Iain M., Whitney, Joseph A., Weirauch, Matthew T., Zhong, Guoqing, Zhu, Hongwei, Houry, Walid A., Brudno, Michael, Ragibizadeh, Sasan, Papp, Balázs, Pál, Csaba, Roth, Frederick P., Giaever, Guri, Nislow, Corey, Troyanskaya, Olga G., Bussey, Howard, Bader, Gary D., Gingras, Anne-Claude, Morris, Quaid D., Kim, Philip M., Kaiser, Chris A., Myers, Chad L., Andrews, Brenda J., Boone, Charles
Publicado no Science (2010)