BROCKMAN: deciphering variance in epigenomic regulators by k-mer factorization

di de Boer, Carl G., Regev, Aviv
Pubblicato in BMC Bioinformatics (2018)

YeTFaSCo: a database of evaluated yeast transcription factor sequence specificities

di de Boer, Carl G., Hughes, Timothy R.
Pubblicazione 2012

Mapping Yeast Transcriptional Networks

di Hughes, Timothy R., de Boer, Carl G.
Pubblicazione 2013

Poly-dA:dT Tracts Form an In Vivo Nucleosomal Turnstile

di de Boer, Carl G., Hughes, Timothy R.
Pubblicazione 2014

MAUDE: inferring expression changes in sorting-based CRISPR screens

di de Boer, Carl G., Ray, John P., Hacohen, Nir, Regev, Aviv
Pubblicato in Genome Biol (2020)

Deciphering eukaryotic gene-regulatory logic with 100 million random promoters

di de Boer, Carl G., Vaishnav, Eeshit Dhaval, Sadeh, Ronen, Abeyta, Esteban Luis, Friedman, Nir, Regev, Aviv
Pubblicato in Nat Biotechnol (2019)

A unified model for yeast transcript definition

di de Boer, Carl G., van Bakel, Harm, Tsui, Kyle, Li, Joyce, Morris, Quaid D., Nislow, Corey, Greenblatt, Jack F., Hughes, Timothy R.
Pubblicazione 2014

Natural variation in non-coding regions underlying phenotypic diversity in budding yeast

di Salinas, Francisco, de Boer, Carl G., Abarca, Valentina, García, Verónica, Cuevas, Mara, Araos, Sebastian, Larrondo, Luis F., Martínez, Claudio, Cubillos, Francisco A.
Pubblicato in Sci Rep (2016)

Heterogeneous Responses of Hematopoietic Stem Cells to Inflammatory Stimuli are Altered with Age

di Mann, Mati, Mehta, Arnav, de Boer, Carl G., Kowalczyk, Monika S., Lee, Kevin, Haldeman, Pearce, Rogel, Noga, Knecht, Abigail R., Farouq, Daneyal, Regev, Aviv, Baltimore, David
Pubblicato in Cell Rep (2018)

Global discovery of lupus genetic risk variant allelic enhancer activity

di Lu, Xiaoming, Chen, Xiaoting, Forney, Carmy, Donmez, Omer, Miller, Daniel, Parameswaran, Sreeja, Hong, Ted, Huang, Yongbo, Pujato, Mario, Cazares, Tareian, Miraldi, Emily R., Ray, John P., de Boer, Carl G., Harley, John B., Weirauch, Matthew T., Kottyan, Leah C.
Pubblicato in Nat Commun (2021)

Prioritizing disease and trait causal variants at the TNFAIP3 locus using functional and genomic features

di Ray, John P., de Boer, Carl G., Fulco, Charles P., Lareau, Caleb A., Kanai, Masahiro, Ulirsch, Jacob C., Tewhey, Ryan, Ludwig, Leif S., Reilly, Steven K., Bergman, Drew T., Engreitz, Jesse M., Issner, Robbyn, Finucane, Hilary K., Lander, Eric S., Regev, Aviv, Hacohen, Nir
Pubblicato in Nat Commun (2020)

Core circadian clock genes regulate leukemia stem cells in AML

di Puram, Rishi V., Kowalczyk, Monika S., de Boer, Carl G., Schneider, Rebekka K., Miller, Peter G., McConkey, Marie, Tothova, Zuzana, Tejero, Héctor, Heckl, Dirk, Järås, Marcus, Chen, Michelle C., Li, Hubo, Tamayo, Alfred, Cowley, Glenn S., Rozenblatt-Rosen, Orit, Al-Shahrour, Fatima, Regev, Aviv, Ebert, Benjamin L.
Pubblicato in Cell (2016)

Defining T cell states associated with response to checkpoint immunotherapy in melanoma

di Sade-Feldman, Moshe, Yizhak, Keren, Bjorgaard, Stacey L., Ray, John P., de Boer, Carl G, Jenkins, Russell W., Lieb, David J., Chen, Jonathan H., Frederick, Dennie T., Barzily-Rokni, Michal, Freeman, Samuel S., Reuben, Alexandre, Hoover, Paul J., Villani, Alexandra-Chloé, Ivanova, Elena, Portell, Andrew, Lizotte, Patrick H., Aref, Amir R., Eliane, Jean-Pierre, Hammond, Marc R., Vitzthum, Hans, Blackmon, Shauna M., Li, Bo, Gopalakrishnan, Vancheswaran, Reddy, Sangeetha M., Cooper, Zachary A, Paweletz, Cloud P., Barbie, David A., Stemmer-Rachamimov, Anat, Flaherty, Keith T., Wargo, Jennifer A., Boland, Genevieve M., Sullivan, Ryan J., Getz, Gad, Hacohen, Nir
Pubblicato in Cell (2018)

Defining T Cell States Associated with Response to Checkpoint Immunotherapy in Melanoma

di Sade-Feldman, Moshe, Yizhak, Keren, Bjorgaard, Stacey L., Ray, John P., de Boer, Carl G., Jenkins, Russell W., Lieb, David J., Chen, Jonathan H., Frederick, Dennie T., Barzily-Rokni, Michal, Freeman, Samuel S., Reuben, Alexandre, Hoover, Paul J., Villani, Alexandra-Chloé, Ivanova, Elena, Portell, Andrew, Lizotte, Patrick H., Aref, Amir R., Eliane, Jean-Pierre, Hammond, Marc R., Vitzthum, Hans, Blackmon, Shauna M., Li, Bo, Gopalakrishnan, Vancheswaran, Reddy, Sangeetha M., Cooper, Zachary A., Paweletz, Cloud P., Barbie, David A., Stemmer-Rachamimov, Anat, Flaherty, Keith T., Wargo, Jennifer A., Boland, Genevieve M., Sullivan, Ryan J., Getz, Gad, Hacohen, Nir
Pubblicato in Cell (2019)