Lack of detectable neoantigen depletion signals in the untreated cancer genome

door Van den Eynden, Jimmy, Jiménez-Sánchez, Alejandro, Miller, Martin L., Larsson, Erik
Gepubliceerd in Nat Genet (2019)

Transfection of small RNAs globally perturbs gene regulation by endogenous microRNAs

door Khan, Aly A., Betel, Doron, Miller, Martin L., Sander, Chris, Leslie, Christina S., Marks, Debora S.
Gepubliceerd in 2009

Emerging landscape of oncogenic signatures across human cancers

door Ciriello, Giovanni, Miller, Martin L, Aksoy, Bülent Arman, Senbabaoglu, Yasin, Schultz, Nikolaus, Sander, Chris
Gepubliceerd in Nat Genet (2013)

MutationAligner: a resource of recurrent mutation hotspots in protein domains in cancer

door Gauthier, Nicholas Paul, Reznik, Ed, Gao, Jianjiong, Sumer, Selcuk Onur, Schultz, Nikolaus, Sander, Chris, Miller, Martin L.
Gepubliceerd in Nucleic Acids Res (2016)

Copy number aberrations drive kinase rewiring, leading to genetic vulnerabilities in cancer

door Memon, Danish, Gill, Michael B., Papachristou, Evangelia K., Ochoa, David, D’Santos, Clive S., Miller, Martin L., Beltrao, Pedro
Gepubliceerd in Cell Rep (2021)

Pan-Cancer Analysis of Mutation Hotspots in Protein Domains

door Miller, Martin L., Reznik, Ed, Gauthier, Nicholas P., Aksoy, Bulent Arman, Korkut, Anil, Gao, Jianjiong, Ciriello, Giovanni, Schultz, Nikolaus, Sander, Chris
Gepubliceerd in Cell Syst (2015)

Spatial Normalization of Reverse Phase Protein Array Data

door Kaushik, Poorvi, Molinelli, Evan J., Miller, Martin L., Wang, Weiqing, Korkut, Anil, Liu, Wenbin, Ju, Zhenlin, Lu, Yiling, Mills, Gordon, Sander, Chris
Gepubliceerd in PLoS One (2014)

Cell-selective labeling with amino acid precursors for proteomic studies of multicellular environments

door Gauthier, Nicholas P, Soufi, Boumediene, Walkowicz, William E, Pedicord, Virginia A, Mavrakis, Konstantinos J, Macek, Boris, Gin, David Y, Sander, Chris, Miller, Martin L
Gepubliceerd in 2013

Centriolar satellites are acentriolar assemblies of centrosomal proteins

door Quarantotti, Valentina, Chen, Jia‐Xuan, Tischer, Julia, Gonzalez Tejedo, Carmen, Papachristou, Evaggelia K, D'Santos, Clive S, Kilmartin, John V, Miller, Martin L, Gergely, Fanni
Gepubliceerd in EMBO J (2019)

Drug Synergy Screen and Network Modeling in Dedifferentiated Liposarcoma Identifies CDK4 and IGF1R as Synergistic Drug Targets

door Miller, Martin L., Molinelli, Evan J., Nair, Jayasree S., Sheikh, Tahir, Samy, Rita, Jing, Xiaohong, He, Qin, Korkut, Anil, Crago, Aimee M., Singer, Samuel, Schwartz, Gary K., Sander, Chris
Gepubliceerd in 2013

Mitochondrial DNA copy number variation across human cancers

door Reznik, Ed, Miller, Martin L, Şenbabaoğlu, Yasin, Riaz, Nadeem, Sarungbam, Judy, Tickoo, Satish K, Al-Ahmadie, Hikmat A, Lee, William, Seshan, Venkatraman E, Hakimi, A Ari, Sander, Chris
Gepubliceerd in eLife (2016)

Mutational analysis identifies therapeutic biomarkers in inflammatory bowel disease-associated colorectal cancers

door Din, Shahida, Wong, Kim, Mueller, Mike F, Oniscu, Anca, Hewinson, James, Black, Catherine J, Miller, Martin L, Jiménez-Sánchez, Alejandro, Rabbie, Roy, Rashid, Mamunar, Satsangi, Jack, Adams, David J, Arends, Mark J
Gepubliceerd in Clin Cancer Res (2018)

Perturbation Biology: Inferring Signaling Networks in Cellular Systems

door Molinelli, Evan J., Korkut, Anil, Wang, Weiqing, Miller, Martin L., Gauthier, Nicholas P., Jing, Xiaohong, Kaushik, Poorvi, He, Qin, Mills, Gordon, Solit, David B., Pratilas, Christine A., Weigt, Martin, Braunstein, Alfredo, Pagnani, Andrea, Zecchina, Riccardo, Sander, Chris
Gepubliceerd in 2013

Integrin-α10 dependency identifies RAC and RICTOR as therapeutic targets in high-grade myxofibrosarcoma

door Okada, Tomoyo, Lee, Ann Y., Qin, Li-Xuan, Agaram, Narasimhan, Mimae, Takahiro, Shen, Yawei, O’Connor, Rachael, López-Lago, Miguel A., Craig, Amanda, Miller, Martin L., Agius, Phaedra, Molinelli, Evan, Socci, Nicholas D., Crago, Aimee M., Shima, Fumi, Sander, Chris, Singer, Samuel
Gepubliceerd in Cancer Discov (2016)

Integrated Multi-Tumor Radio-Genomic Marker of Outcomes in Patients with High Serous Ovarian Carcinoma

door Veeraraghavan, Harini, Vargas, Herbert Alberto, Jimenez-Sanchez, Alejandro, Micco, Maura, Mema, Eralda, Lakhman, Yulia, Crispin-Ortuzar, Mireia, Huang, Erich P., Levine, Douglas A., Grisham, Rachel N., Abu-Rustum, Nadeem, Deasy, Joseph O., Snyder, Alexandra, Miller, Martin L., Brenton, James D., Sala, Evis
Gepubliceerd in Cancers (Basel) (2020)

Heterogeneous Tumor-Immune Microenvironments among Differentially Growing Metastases in an Ovarian Cancer Patient

door Jiménez-Sánchez, Alejandro, Memon, Danish, Pourpe, Stephane, Veeraraghavan, Harini, Li, Yanyun, Vargas, Hebert Alberto, Gill, Michael B., Park, Kay J., Zivanovic, Oliver, Konner, Jason, Ricca, Jacob, Zamarin, Dmitriy, Walther, Tyler, Aghajanian, Carol, Wolchok, Jedd D., Sala, Evis, Merghoub, Taha, Snyder, Alexandra, Miller, Martin L.
Gepubliceerd in Cell (2017)

Promises and challenges of adoptive T-cell therapies for solid tumours

door Morotti, Matteo, Albukhari, Ashwag, Alsaadi, Abdulkhaliq, Artibani, Mara, Brenton, James D., Curbishley, Stuart M., Dong, Tao, Dustin, Michael L., Hu, Zhiyuan, McGranahan, Nicholas, Miller, Martin L., Santana-Gonzalez, Laura, Seymour, Leonard W., Shi, Tingyan, Van Loo, Peter, Yau, Christopher, White, Helen, Wietek, Nina, Church, David N., Wedge, David C., Ahmed, Ahmed A.
Gepubliceerd in Br J Cancer (2021)

Mutational landscape determines sensitivity to PD-1 blockade in non–small cell lung cancer

door Rizvi, Naiyer A., Hellmann, Matthew D., Snyder, Alexandra, Kvistborg, Pia, Makarov, Vladimir, Havel, Jonathan J., Lee, William, Yuan, Jianda, Wong, Phillip, Ho, Teresa S., Miller, Martin L., Rekhtman, Natasha, Moreira, Andre L., Ibrahim, Fawzia, Bruggeman, Cameron, Gasmi, Billel, Zappasodi, Roberta, Maeda, Yuka, Sander, Chris, Garon, Edward B., Merghoub, Taha, Wolchok, Jedd D., Schumacher, Ton N., Chan, Timothy A.
Gepubliceerd in Science (2015)

Multi-site clonality analysis uncovers pervasive heterogeneity across melanoma metastases

door Rabbie, Roy, Ansari-Pour, Naser, Cast, Oliver, Lau, Doreen, Scott, Francis, Welsh, Sarah J., Parkinson, Christine, Khoja, Leila, Moore, Luiza, Tullett, Mark, Wong, Kim, Ferreira, Ingrid, Gómez, Julia M. Martínez, Levesque, Mitchell, Gallagher, Ferdia A., Jiménez-Sánchez, Alejandro, Riva, Laura, Miller, Martin L., Allinson, Kieren, Campbell, Peter J., Corrie, Pippa, Wedge, David C., Adams, David J.
Gepubliceerd in Nat Commun (2020)

UVB-Induced Tumor Heterogeneity Diminishes Immune Response in Melanoma

door Wolf, Yochai, Bartok, Osnat, Patkar, Sushant, Eli, Gitit Bar, Cohen, Sapir, Litchfield, Kevin, Levy, Ronen, Jiménez-Sánchez, Alejandro, Trabish, Sophie, Lee, Joo Sang, Karathia, Hiren, Barnea, Eilon, Day, Chi-Ping, Cinnamon, Einat, Stein, Ilan, Solomon, Adam, Bitton, Lital, Pérez-Guijarro, Eva, Dubovik, Tania, Shen-Orr, Shai S., Miller, Martin L., Merlino, Glenn, Levin, Yishai, Pikarsky, Eli, Eisenbach, Lea, Admon, Arie, Swanton, Charles, Ruppin, Eytan, Samuels, Yardena
Gepubliceerd in Cell (2019)