Reply to Watkins et al.: Whole-genome sequencing-based identification of diverse tandem duplicator phenotypes in human cancers

Por Menghi, Francesca, Liu, Edison T.
Publicado no Proc Natl Acad Sci U S A (2016)

Global analysis of gene expression in NGF-deprived sympathetic neurons identifies molecular pathways associated with cell death

Por Kristiansen, Mark, Menghi, Francesca, Hughes, Rosie, Hubank, Mike, Ham, Jonathan
Publicado em 2011

Genome-wide analysis of alternative splicing in medulloblastoma identifies splicing patterns characteristic of normal cerebellar development

Por Menghi, Francesca, Jacques, Thomas S., Barenco, Martino, Schwalbe, Ed C., Clifford, Steven C., Hubank, Mike, Ham, Jonathan
Publicado em 2011

Picky Comprehensively Detects High Resolution Structural Variants in Nanopore Long Reads

Por Gong, Liang, Wong, Chee-Hong, Cheng, Wei-Chung, Tjong, Harianto, Menghi, Francesca, Ngan, Chew Yee, Liu, Edison T., Wei, Chia-Lin
Publicado no Nat Methods (2018)

QuIN: A Web Server for Querying and Visualizing Chromatin Interaction Networks

Por Thibodeau, Asa, Márquez, Eladio J., Luo, Oscar, Ruan, Yijun, Menghi, Francesca, Shin, Dong-Guk, Stitzel, Michael L., Vera-Licona, Paola, Ucar, Duygu
Publicado no PLoS Comput Biol (2016)

Mechanism of tandem duplication formation in BRCA1 mutant cells

Por Willis, Nicholas A., Frock, Richard L., Menghi, Francesca, Duffey, Erin E., Panday, Arvind, Camacho, Virginia, Hasty, E. Paul, Liu, Edison T., Alt, Frederick W., Scully, Ralph
Publicado no Nature (2017)

The Tandem Duplicator Phenotype Is a Prevalent Genome-Wide Cancer Configuration Driven by Distinct Gene Mutations

Por Menghi, Francesca, Barthel, Floris P., Yadav, Vinod, Tang, Ming, Ji, Bo, Tang, Zhonghui, Carter, Gregory W., Ruan, Yijun, Scully, Ralph, Verhaak, Roel G.W., Jonkers, Jos, Liu, Edison T.
Publicado no Cancer Cell (2018)

DNA Microarray Analysis Identifies CKS2 and LEPR as Potential Markers of Meningioma Recurrence

Por Menghi, Francesca, Orzan, Francesca N., Eoli, Marica, Farinotti, Mariangela, Maderna, Emanuela, Pisati, Federica, Bianchessi, Donatella, Valletta, Lorella, Lodrini, Sandro, Galli, Giuseppe, Anghileri, Elena, Pellegatta, Serena, Pollo, Bianca, Finocchiaro, Gaetano
Publicado em 2011

Large-Scale Functional Organization of Long-Range Chromatin Interaction Networks

Por Sandhu, Kuljeet Singh, Li, Guoliang, Poh, Huay Mei, Quek, Yu Ling Kelly, Sia, Yee Yen, Peh, Su Qin, Mulawadi, Fabianus Hendriyan, Lim, Joanne, Sikic, Mile, Menghi, Francesca, Thalamuthu, Anbupalam, Sung, Wing Kin, Ruan, Xiaoan, Fullwood, Melissa Jane, Liu, Edison, Csermely, Peter, Ruan, Yijun
Publicado em 2012

High-resolution deconstruction of evolution induced by chemotherapy treatments in breast cancer xenografts

Por Kim, Hyunsoo, Kumar, Pooja, Menghi, Francesca, Noorbakhsh, Javad, Cerveira, Eliza, Ryan, Mallory, Zhu, Qihui, Ananda, Guruprasad, George, Joshy, Chen, Henry C., Mockus, Susan, Zhang, Chengsheng, Yang, Yan, Keck, James, Karuturi, R. Krishna Murthy, Bult, Carol J., Lee, Charles, Liu, Edison T., Chuang, Jeffrey H.
Publicado no Sci Rep (2018)

The tandem duplicator phenotype as a distinct genomic configuration in cancer

Por Menghi, Francesca, Inaki, Koichiro, Woo, XingYi, Kumar, Pooja A., Grzeda, Krzysztof R., Malhotra, Ankit, Yadav, Vinod, Kim, Hyunsoo, Marquez, Eladio J., Ucar, Duygu, Shreckengast, Phung T., Wagner, Joel P., MacIntyre, George, Murthy Karuturi, Krishna R., Scully, Ralph, Keck, James, Chuang, Jeffrey H., Liu, Edison T.
Publicado no Proc Natl Acad Sci U S A (2016)

Extrachromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers

Por Kim, Hoon, Nguyen, Nam-Phuong, Turner, Kristen, Wu, Sihan, Gujar, Amit D., Luebeck, Jens, Liu, Jihe, Deshpande, Viraj, Rajkumar, Utkrisht, Namburi, Sandeep, Amin, Samirkumar B., Yi, Eunhee, Menghi, Francesca, Schulte, Johannes H., Henssen, Anton G., Chang, Howard Y., Beck, Christine, Mischel, Paul S., Bafna, Vineet, Verhaak, Roel G.W.
Publicado no Nat Genet (2020)

Systems consequences of amplicon formation in human breast cancer

Por Inaki, Koichiro, Menghi, Francesca, Woo, Xing Yi, Wagner, Joel P., Jacques, Pierre-Étienne, Lee, Yi Fang, Shreckengast, Phung Trang, Soon, Wendy WeiJia, Malhotra, Ankit, Teo, Audrey S.M., Hillmer, Axel M., Khng, Alexis Jiaying, Ruan, Xiaoan, Ong, Swee Hoe, Bertrand, Denis, Nagarajan, Niranjan, Karuturi, R. Krishna Murthy, Hidalgo Miranda, Alfredo, Liu, Edison T.
Publicado em 2014