GiRaF: robust, computational identification of influenza reassortments via graph mining

par Nagarajan, Niranjan, Kingsford, Carl
Publié 2011

Boosting natural history research via metagenomic clean-up of crowdsourced feces

par Srivathsan, Amrita, Nagarajan, Niranjan, Meier, Rudolf
Publié dans PLoS Biol (2019)

Scaffolding and validation of bacterial genome assemblies using optical restriction maps

par Nagarajan, Niranjan, Read, Timothy D., Pop, Mihai
Publié 2008

Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples

par White, James Robert, Nagarajan, Niranjan, Pop, Mihai
Publié 2009

2009 Swine-Origin Influenza A (H1N1) Resembles Previous Influenza Isolates

par Kingsford, Carl, Nagarajan, Niranjan, Salzberg, Steven L.
Publié 2009

Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput Paired-End Sequences

par Gao, Song, Sung, Wing-Kin, Nagarajan, Niranjan
Publié 2011

Fast and accurate de novo genome assembly from long uncorrected reads

par Vaser, Robert, Sović, Ivan, Nagarajan, Niranjan, Šikić, Mile
Publié dans Genome Res (2017)

TUGDA: task uncertainty guided domain adaptation for robust generalization of cancer drug response prediction from in vitro to in vivo settings

par Peres da Silva, Rafael, Suphavilai, Chayaporn, Nagarajan, Niranjan
Publié dans Bioinformatics (2021)

OPTIMA: sensitive and accurate whole-genome alignment of error-prone genomic maps by combinatorial indexing and technology-agnostic statistical analysis

par Verzotto, Davide, M. Teo, Audrey S., Hillmer, Axel M., Nagarajan, Niranjan
Publié dans Gigascience (2016)

OPERA-LG: efficient and exact scaffolding of large, repeat-rich eukaryotic genomes with performance guarantees

par Gao, Song, Bertrand, Denis, Chia, Burton K. H., Nagarajan, Niranjan
Publié dans Genome Biol (2016)

Mapping RNA-RNA Interactions Globally Using Biotinylated Psoralen

par Aw, Jong Ghut Ashley, Shen, Yang, Nagarajan, Niranjan, Wan, Yue
Publié dans J Vis Exp (2017)

The importance of study design for detecting differentially abundant features in high-throughput experiments

par Luo, Huaien, Li, Juntao, Chia, Burton Kuan Hui, Robson, Paul, Nagarajan, Niranjan
Publié dans Genome Biol (2014)

Single-molecule optical genome mapping of a human HapMap and a colorectal cancer cell line

par Teo, Audrey S. M., Verzotto, Davide, Yao, Fei, Nagarajan, Niranjan, Hillmer, Axel M.
Publié dans Gigascience (2015)

Draft Genome Sequence of Polychlorinated Biphenyl-Dechlorinating Dehalococcoides mccartyi Strain SG1, Which Carries a Circular Putative Plasmid

par Wang, Shanquan, Chng, Kern Rei, Wu, Chen, Wilm, Andreas, Nagarajan, Niranjan, He, Jianzhong
Publié 2014

Fast and sensitive mapping of nanopore sequencing reads with GraphMap

par Sović, Ivan, Šikić, Mile, Wilm, Andreas, Fenlon, Shannon Nicole, Chen, Swaine, Nagarajan, Niranjan
Publié dans Nat Commun (2016)

Alignment and clustering of phylogenetic markers - implications for microbial diversity studies

par White, James R, Navlakha, Saket, Nagarajan, Niranjan, Ghodsi, Mohammad-Reza, Kingsford, Carl, Pop, Mihai
Publié 2010

Genomic characterization of three unique Dehalococcoides that respire on persistent polychlorinated biphenyls

par Wang, Shanquan, Chng, Kern Rei, Wilm, Andreas, Zhao, Siyan, Yang, Kun-Lin, Nagarajan, Niranjan, He, Jianzhong
Publié 2014

INC-Seq: accurate single molecule reads using nanopore sequencing

par Li, Chenhao, Chng, Kern Rei, Boey, Esther Jia Hui, Ng, Amanda Hui Qi, Wilm, Andreas, Nagarajan, Niranjan
Publié dans Gigascience (2016)

Development of a genetically programed vanillin-sensing bacterium for high-throughput screening of lignin-degrading enzyme libraries

par Sana, Barindra, Chia, Kuan Hui Burton, Raghavan, Sarada S., Ramalingam, Balamurugan, Nagarajan, Niranjan, Seayad, Jayasree, Ghadessy, Farid J.
Publié dans Biotechnol Biofuels (2017)

An expectation-maximization algorithm enables accurate ecological modeling using longitudinal microbiome sequencing data

par Li, Chenhao, Chng, Kern Rei, Kwah, Junmei Samantha, Av-Shalom, Tamar V., Tucker-Kellogg, Lisa, Nagarajan, Niranjan
Publié dans Microbiome (2019)