The power of protein interaction networks for associating genes with diseases

door Navlakha, Saket, Kingsford, Carl
Gepubliceerd in 2010

Network Archaeology: Uncovering Ancient Networks from Present-Day Interactions

door Navlakha, Saket, Kingsford, Carl
Gepubliceerd in 2011

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

door Marçais, Guillaume, Kingsford, Carl
Gepubliceerd in 2011

GiRaF: robust, computational identification of influenza reassortments via graph mining

door Nagarajan, Niranjan, Kingsford, Carl
Gepubliceerd in 2011

Global network alignment using multiscale spectral signatures

door Patro, Rob, Kingsford, Carl
Gepubliceerd in 2012

Graph rigidity reveals well-constrained regions of chromosome conformation embeddings

door Duggal, Geet, Kingsford, Carl
Gepubliceerd in 2012

Predicting protein interactions via parsimonious network history inference

door Patro, Rob, Kingsford, Carl
Gepubliceerd in 2013

Reference-based compression of short-read sequences using path encoding

door Kingsford, Carl, Patro, Rob
Gepubliceerd in Bioinformatics (2015)

Data-dependent bucketing improves reference-free compression of sequencing reads

door Patro, Rob, Kingsford, Carl
Gepubliceerd in Bioinformatics (2015)

Fast Search of Thousands of Short-Read Sequencing Experiments

door Solomon, Brad, Kingsford, Carl
Gepubliceerd in Nat Biotechnol (2016)

Diffusion archeology for diffusion progression history reconstruction

door Sefer, Emre, Kingsford, Carl
Gepubliceerd in Knowl Inf Syst (2015)

Accurate assembly of transcripts through phase-preserving graph decomposition

door Shao, Mingfu, Kingsford, Carl
Gepubliceerd in Nat Biotechnol (2017)

Kourami: graph-guided assembly for novel human leukocyte antigen allele discovery

door Lee, Heewook, Kingsford, Carl
Gepubliceerd in Genome Biol (2018)

Quantifying the similarity of topological domains across normal and cancer human cell types

door Sauerwald, Natalie, Kingsford, Carl
Gepubliceerd in Bioinformatics (2018)

Improved Search of Large Transcriptomic Sequencing Databases Using Split Sequence Bloom Trees

door Solomon, Brad, Kingsford, Carl
Gepubliceerd in J Comput Biol (2018)

Semi-nonparametric modeling of topological domain formation from epigenetic data

door Sefer, Emre, Kingsford, Carl
Gepubliceerd in Algorithms Mol Biol (2019)

Detecting, categorizing, and correcting coverage anomalies of RNA-seq quantification

door Ma, Cong, Kingsford, Carl
Gepubliceerd in Cell Syst (2019)

Metric Labeling and Semimetric Embedding for Protein Annotation Prediction

door Sefer, Emre, Kingsford, Carl
Gepubliceerd in J Comput Biol (2021)

Constructing small genome graphs via string compression

door Qiu, Yutong, Kingsford, Carl
Gepubliceerd in Bioinformatics (2021)

What are decision trees?

door Kingsford, Carl, Salzberg, Steven L
Gepubliceerd in 2008