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Accurate assembly of transcripts through phase-preserving graph decomposition

We introduce Scallop, an accurate reference-based transcript assembler that improves reconstruction of multi-exon and lowly expressed transcripts. Scallop preserves long-range phasing paths extracted from reads, while producing a parsimonious set of transcripts and minimizing coverage deviation. On...

Deskribapen osoa

Gorde:
Xehetasun bibliografikoak
Argitaratua izan da:Nat Biotechnol
Egile Nagusiak: Shao, Mingfu, Kingsford, Carl
Formatua: Artigo
Hizkuntza:Inglês
Argitaratua: 2017
Gaiak:
Sarrera elektronikoa:https://ncbi.nlm.nih.gov/pmc/articles/PMC5722698/
https://ncbi.nlm.nih.gov/pubmed/29131147
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1038/nbt.4020
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