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A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

Motivation: Counting the number of occurrences of every k-mer (substring of length k) in a long string is a central subproblem in many applications, including genome assembly, error correction of sequencing reads, fast multiple sequence alignment and repeat detection. Recently, the deep sequence cov...

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Detaylı Bibliyografya
Asıl Yazarlar: Marçais, Guillaume, Kingsford, Carl
Materyal Türü: Artigo
Dil:Inglês
Baskı/Yayın Bilgisi: Oxford University Press 2011
Konular:
Online Erişim:https://ncbi.nlm.nih.gov/pmc/articles/PMC3051319/
https://ncbi.nlm.nih.gov/pubmed/21217122
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btr011
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