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Efficient counting of k-mers in DNA sequences using a bloom filter
BACKGROUND: Counting k-mers (substrings of length k in DNA sequence data) is an essential component of many methods in bioinformatics, including for genome and transcriptome assembly, for metagenomic sequencing, and for error correction of sequence reads. Although simple in principle, counting k-mer...
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| Hlavní autoři: | , |
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| Médium: | Artigo |
| Jazyk: | Inglês |
| Vydáno: |
BioMed Central
2011
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| On-line přístup: | https://ncbi.nlm.nih.gov/pmc/articles/PMC3166945/ https://ncbi.nlm.nih.gov/pubmed/21831268 https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/1471-2105-12-333 |
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