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Efficient counting of k-mers in DNA sequences using a bloom filter

BACKGROUND: Counting k-mers (substrings of length k in DNA sequence data) is an essential component of many methods in bioinformatics, including for genome and transcriptome assembly, for metagenomic sequencing, and for error correction of sequence reads. Although simple in principle, counting k-mer...

Disgrifiad llawn

Wedi'i Gadw mewn:
Manylion Llyfryddiaeth
Prif Awduron: Melsted, Páll, Pritchard, Jonathan K
Fformat: Artigo
Iaith:Inglês
Cyhoeddwyd: BioMed Central 2011
Pynciau:
Mynediad Ar-lein:https://ncbi.nlm.nih.gov/pmc/articles/PMC3166945/
https://ncbi.nlm.nih.gov/pubmed/21831268
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/1471-2105-12-333
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