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MQF and buffered MQF: quotient filters for efficient storage of k-mers with their counts and metadata

BACKGROUND: Specialized data structures are required for online algorithms to efficiently handle large sequencing datasets. The counting quotient filter (CQF), a compact hashtable, can efficiently store k-mers with a skewed distribution. RESULT: Here, we present the mixed-counters quotient filter (M...

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Pubblicato in:BMC Bioinformatics
Autori principali: Shokrof, Moustafa, Brown, C. Titus, Mansour, Tamer A.
Natura: Artigo
Lingua:Inglês
Pubblicazione: BioMed Central 2021
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Accesso online:https://ncbi.nlm.nih.gov/pmc/articles/PMC7885209/
https://ncbi.nlm.nih.gov/pubmed/33593271
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s12859-021-03996-x
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