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Designing small universal k-mer hitting sets for improved analysis of high-throughput sequencing

With the rapidly increasing volume of deep sequencing data, more efficient algorithms and data structures are needed. Minimizers are a central recent paradigm that has improved various sequence analysis tasks, including hashing for faster read overlap detection, sparse suffix arrays for creating sma...

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Détails bibliographiques
Publié dans:PLoS Comput Biol
Auteurs principaux: Orenstein, Yaron, Pellow, David, Marçais, Guillaume, Shamir, Ron, Kingsford, Carl
Format: Artigo
Langue:Inglês
Publié: Public Library of Science 2017
Sujets:
Accès en ligne:https://ncbi.nlm.nih.gov/pmc/articles/PMC5645146/
https://ncbi.nlm.nih.gov/pubmed/28968408
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1371/journal.pcbi.1005777
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