Improving the performance of minimizers and winnowing schemes

MOTIVATION: The minimizers scheme is a method for selecting k-mers from sequences. It is used in many bioinformatics software tools to bin comparable sequences or to sample a sequence in a deterministic fashion at approximately regular intervals, in order to reduce memory consumption and processing...

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Détails bibliographiques
Publié dans:Bioinformatics
Auteurs principaux: Marçais, Guillaume, Pellow, David, Bork, Daniel, Orenstein, Yaron, Shamir, Ron, Kingsford, Carl
Format: Artigo
Langue:Inglês
Publié: Oxford University Press 2017
Sujets:
Ismb/Eccb 2017: The 25th Annual Conference Intelligent Systems for Molecular Biology Held Jointly with the 16th Annual European Conference on Computational Biology, Prague, Czech Republic, July 21–25, 2017
Accès en ligne:https://ncbi.nlm.nih.gov/pmc/articles/PMC5870760/
https://ncbi.nlm.nih.gov/pubmed/28881970
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btx235
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