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Lower Density Selection Schemes via Small Universal Hitting Sets with Short Remaining Path Length

Universal hitting sets (UHS) are sets of words that are unavoidable: every long enough sequence is hit by the set (i.e., it contains a word from the set). There is a tight relationship between UHS and minimizer schemes, where minimizer schemes with low density (i.e., efficient schemes) correspond to...

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Detalhes bibliográficos
Publicado no:J Comput Biol
Main Authors: Zheng, Hongyu, Kingsford, Carl, Marçais, Guillaume
Formato: Artigo
Idioma:Inglês
Publicado em: Mary Ann Liebert, Inc., publishers 2021
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC8066347/
https://ncbi.nlm.nih.gov/pubmed/33325773
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1089/cmb.2020.0432
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