Evolution of orthologous tandemly arrayed gene clusters

ανά Tremblay Savard, Olivier, Bertrand, Denis, El-Mabrouk, Nadia
Έκδοση 2011

OPERA-LG: efficient and exact scaffolding of large, repeat-rich eukaryotic genomes with performance guarantees

ανά Gao, Song, Bertrand, Denis, Chia, Burton K. H., Nagarajan, Niranjan
Τόπος έκδοσης Genome Biol (2016)

The artiodactyl APOBEC3 innate immune repertoire shows evidence for a multi-functional domain organization that existed in the ancestor of placental mammals

ανά LaRue, Rebecca S, Jónsson, Stefán R, Silverstein, Kevin AT, Lajoie, Mathieu, Bertrand, Denis, El-Mabrouk, Nadia, Hötzel, Isidro, Andrésdóttir, Valgerdur, Smith, Timothy PL, Harris, Reuben S
Έκδοση 2008

Evaluating the accuracy of Listeria monocytogenes assemblies from quasimetagenomic samples using long and short reads

ανά Commichaux, Seth, Javkar, Kiran, Ramachandran, Padmini, Nagarajan, Niranjan, Bertrand, Denis, Chen, Yi, Reed, Elizabeth, Gonzalez-Escalona, Narjol, Strain, Errol, Rand, Hugh, Pop, Mihai, Ottesen, Andrea
Τόπος έκδοσης BMC Genomics (2021)

LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets

ανά Wilm, Andreas, Aw, Pauline Poh Kim, Bertrand, Denis, Yeo, Grace Hui Ting, Ong, Swee Hoe, Wong, Chang Hua, Khor, Chiea Chuen, Petric, Rosemary, Hibberd, Martin Lloyd, Nagarajan, Niranjan
Έκδοση 2012

Patient-specific driver gene prediction and risk assessment through integrated network analysis of cancer omics profiles

ανά Bertrand, Denis, Chng, Kern Rei, Sherbaf, Faranak Ghazi, Kiesel, Anja, Chia, Burton K. H., Sia, Yee Yen, Huang, Sharon K., Hoon, Dave S.B., Liu, Edison T., Hillmer, Axel, Nagarajan, Niranjan
Τόπος έκδοσης Nucleic Acids Res (2015)

Duration of Carbapenemase-Producing Enterobacteriaceae Carriage in Hospital Patients

ανά Mo, Yin, Hernandez-Koutoucheva, Anastasia, Musicha, Patrick, Bertrand, Denis, Lye, David, Ng, Oon Tek, Fenlon, Shannon N., Chen, Swaine L., Ling, Moi Lin, Tang, Wen Ying, Barkham, Timothy, Nagarajan, Niranjan, Cooper, Ben S., Marimuthu, Kalisvar
Τόπος έκδοσης Emerg Infect Dis (2020)

Mutational spectrum of Barrett's stem cells suggests paths to initiation of a precancerous lesion

ανά Yamamoto, Yusuke, Wang, Xia, Bertrand, Denis, Kern, Florian, Zhang, Ting, Duleba, Marcin, Srivastava, Supriya, Khor, Chiea Chuen, Hu, Yuanyu, Wilson, Lane H., Blaszyk, Hagen, Rolshud, Daniil, Teh, Ming, Liu, Jianjun, Howitt, Brooke E., Vincent, Matthew, Crum, Christopher P., Nagarajan, Niranjan, Ho, Khek Yu, McKeon, Frank, Xian, Wa
Τόπος έκδοσης Nat Commun (2016)

Systems consequences of amplicon formation in human breast cancer

ανά Inaki, Koichiro, Menghi, Francesca, Woo, Xing Yi, Wagner, Joel P., Jacques, Pierre-Étienne, Lee, Yi Fang, Shreckengast, Phung Trang, Soon, Wendy WeiJia, Malhotra, Ankit, Teo, Audrey S.M., Hillmer, Axel M., Khng, Alexis Jiaying, Ruan, Xiaoan, Ong, Swee Hoe, Bertrand, Denis, Nagarajan, Niranjan, Karuturi, R. Krishna Murthy, Hidalgo Miranda, Alfredo, Liu, Edison T.
Έκδοση 2014

Cloning and Variation of Ground State Intestinal Stem Cells

ανά Wang, Xia, Yamamoto, Yusuke, Wilson, Lane H., Zhang, Ting, Howitt, Brooke, Farrow, Melissa A., Kern, Florian, Ning, Gang, Hong, Yue, Khor, Chiea Chuen, Chevalier, Benoit, Bertrand, Denis, Wu, Lingyan, Nagarajan, Niranjan, Sylvester, Francisco A., Hyams, Jeffrey S., Devers, Thomas, Bronson, Roderick, Lacy, D. Borden, Ho, Khek Yu, Crum, Christopher P., McKeon, Frank, Xian, Wa
Τόπος έκδοσης Nature (2015)

The Opisthorchis viverrini genome provides insights into life in the bile duct

ανά Young, Neil D., Nagarajan, Niranjan, Lin, Suling Joyce, Korhonen, Pasi K., Jex, Aaron R., Hall, Ross S., Safavi-Hemami, Helena, Kaewkong, Worasak, Bertrand, Denis, Gao, Song, Seet, Qihui, Wongkham, Sopit, Teh, Bin Tean, Wongkham, Chaisiri, Intapan, Pewpan Maleewong, Maleewong, Wanchai, Yang, Xinhua, Hu, Min, Wang, Zuo, Hofmann, Andreas, Sternberg, Paul W., Tan, Patrick, Wang, Jun, Gasser, Robin B.
Έκδοση 2014

Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment

ανά Chng, Kern Rei, Li, Chenhao, Bertrand, Denis, Ng, Amanda Hui Qi, Kwah, Junmei Samantha, Low, Hwee Meng, Tong, Chengxuan, Natrajan, Maanasa, Zhang, Michael Hongjie, Xu, Licheng, Ko, Karrie Kwan Ki, Ho, Eliza Xin Pei, Av-Shalom, Tamar V., Teo, Jeanette Woon Pei, Khor, Chiea Chuen, Chen, Swaine L., Mason, Christopher E., Ng, Oon Tek, Marimuthu, Kalisvar, Ang, Brenda, Nagarajan, Niranjan
Τόπος έκδοσης Nat Med (2020)

Tissue Microbiome Profiling Identifies an Enrichment of Specific Enteric Bacteria in Opisthorchis viverrini Associated Cholangiocarcinoma

ανά Chng, Kern Rei, Chan, Sock Hoai, Ng, Amanda Hui Qi, Li, Chenhao, Jusakul, Apinya, Bertrand, Denis, Wilm, Andreas, Choo, Su Pin, Tan, Damien Meng Yew, Lim, Kiat Hon, Soetinko, Roy, Ong, Choon Kiat, Duda, Dan G., Dima, Simona, Popescu, Irinel, Wongkham, Chaisiri, Feng, Zhu, Yeoh, Khay Guan, Teh, Bin Tean, Yongvanit, Puangrat, Wongkham, Sopit, Bhudhisawasdi, Vajaraphongsa, Khuntikeo, Narong, Tan, Patrick, Pairojkul, Chawalit, Ngeow, Joanne, Nagarajan, Niranjan
Τόπος έκδοσης EBioMedicine (2016)

Phenotype-driven precision oncology as a guide for clinical decisions one patient at a time

ανά Chia, Shumei, Low, Joo-Leng, Zhang, Xiaoqian, Kwang, Xue-Lin, Chong, Fui-Teen, Sharma, Ankur, Bertrand, Denis, Toh, Shen Yon, Leong, Hui-Sun, Thangavelu, Matan T., Hwang, Jacqueline S. G., Lim, Kok-Hing, Skanthakumar, Thakshayeni, Tan, Hiang-Khoon, Su, Yan, Hui Choo, Siang, Hentze, Hannes, Tan, Iain B. H., Lezhava, Alexander, Tan, Patrick, Tan, Daniel S. W., Periyasamy, Giridharan, Koh, Judice L. Y., Gopalakrishna Iyer, N., DasGupta, Ramanuj
Τόπος έκδοσης Nat Commun (2017)

Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics

ανά Ding, Li, Bailey, Matthew H., Porta-Pardo, Eduard, Thorsson, Vesteinn, Colaprico, Antonio, Bertrand, Denis, Gibbs, David L., Weerasinghe, Amila, Huang, Kuan-lin, Tokheim, Collin, Cortés-Ciriano, Isidro, Jayasinghe, Reyka, Chen, Feng, Yu, Lihua, Sun, Sam, Olsen, Catharina, Kim, Jaegil, Taylor, Alison M., Cherniack, Andrew D., Akbani, Rehan, Suphavilai, Chayaporn, Nagarajan, Niranjan, Stuart, Josh M., Mills, Gordon B, Wyczalkowski, Matthew A., Vincent, Benjamin, Hutter, Carolyn M., Zenklusen, Jean Claude, Hoadley, Katherine A., Wendl, Michael C., Shmulevich, llya, Lazar, Alexander J., Wheeler, David, Getz, Gad
Τόπος έκδοσης Cell (2018)

Whole-genome reconstruction and mutational signatures in gastric cancer

ανά Nagarajan, Niranjan, Bertrand, Denis, Hillmer, Axel M, Zang, Zhi Jiang, Yao, Fei, Jacques, Pierre-Étienne, Teo, Audrey SM, Cutcutache, Ioana, Zhang, Zhenshui, Lee, Wah Heng, Sia, Yee Yen, Gao, Song, Ariyaratne, Pramila N, Ho, Andrea, Woo, Xing Yi, Veeravali, Lavanya, Ong, Choon Kiat, Deng, Niantao, Desai, Kartiki V, Khor, Chiea Chuen, Hibberd, Martin L, Shahab, Atif, Rao, Jaideepraj, Wu, Mengchu, Teh, Ming, Zhu, Feng, Chin, Sze Yung, Pang, Brendan, So, Jimmy BY, Bourque, Guillaume, Soong, Richie, Sung, Wing-Kin, Tean Teh, Bin, Rozen, Steven, Ruan, Xiaoan, Yeoh, Khay Guan, Tan, Patrick BO, Ruan, Yijun
Έκδοση 2012

Comprehensive Characterization of Cancer Driver Genes and Mutations

ανά Bailey, Matthew H., Tokheim, Collin, Porta-Pardo, Eduard, Sengupta, Sohini, Bertrand, Denis, Weerasinghe, Amila, Colaprico, Antonio, Wendl, Michael C., Kim, Jaegil, Reardon, Brendan, Ng, Kwok-Shing, Jeong, Kang Jin, Cao, Song, Wang, Zixing, Gao, JianJiong, Gao, Qingsong, Wang, Fang, Liu, Eric Minwei, Mularoni, Loris, Rubio-Perez, Carlota, Nagarajan, Niranjan, Cortés-Ciriano, Isidro, Zhou, Daniel Cui, Liang, Wen-Wei, Hess, Julian M., Yellapantula, Venkata D., Tamborero, David, Gonzalez-Perez, Abel, Suphavilai, Chayaporn, Ko, Jia Yu, Khurana, Ekta, Park, Peter J., Van Allen, Eliezer, Liang, Han, Lawrence, Michael, Godzik, Adam, Lopez-Bigas, Nuria, Stuart, Josh, Wheeler, David, Getz, Gad, Chen, Ken, Lazar, Alexander J., Mills, Gordon B, Karchin, Rachel, Ding, Li
Τόπος έκδοσης Cell (2018)

Comprehensive Characterization of Cancer Driver Genes and Mutations

ανά Bailey, Matthew H., Tokheim, Collin, Porta-Pardo, Eduard, Sengupta, Sohini, Bertrand, Denis, Weerasinghe, Amila, Colaprico, Antonio, Wendl, Michael C., Kim, Jaegil, Reardon, Brendan, Ng, Patrick Kwok-Shing, Jeong, Kang Jin, Cao, Song, Wang, Zixing, Gao, Jianjiong, Gao, Qingsong, Wang, Fang, Liu, Eric Minwei, Mularoni, Loris, Rubio-Perez, Carlota, Nagarajan, Niranjan, Cortés-Ciriano, Isidro, Zhou, Daniel Cui, Liang, Wen-Wei, Hess, Julian M., Yellapantula, Venkata D., Tamborero, David, Gonzalez-Perez, Abel, Suphavilai, Chayaporn, Ko, Jia Yu, Khurana, Ekta, Park, Peter J., Van Allen, Eliezer M., Liang, Han, Lawrence, Michael S., Godzik, Adam, Lopez-Bigas, Nuria, Stuart, Josh, Wheeler, David, Getz, Gad, Chen, Ken, Lazar, Alexander J., Mills, Gordon B., Karchin, Rachel, Ding, Li
Τόπος έκδοσης Cell (2018)