Differential co-expression framework to quantify goodness of biclusters and compare biclustering algorithms

Por Chia, Burton Kuan Hui, Karuturi, R Krishna Murthy
Publicado em 2010

Identifying Driver Genes in Cancer by Triangulating Gene Expression, Gene Location, and Survival Data

Por Rouam, Sigrid, Miller, Lance D, Karuturi, R Krishna Murthy
Publicado no Cancer Inform (2015)

MultiDCoX: Multi-factor analysis of differential co-expression

Por Liany, Herty, Rajapakse, Jagath C., Karuturi, R. Krishna Murthy
Publicado no BMC Bioinformatics (2017)

A computational method to aid the design and analysis of single cell RNA-seq experiments for cell type identification

Por Abrams, Douglas, Kumar, Parveen, Karuturi, R. Krishna Murthy, George, Joshy
Publicado no BMC Bioinformatics (2019)

ConReg-R: Extrapolative recalibration of the empirical distribution of p-values to improve false discovery rate estimates

Por Li, Juntao, Paramita, Puteri, Choi, Kwok Pui, Karuturi, R Krishna Murthy
Publicado em 2011

Genome-wide estimation of firing efficiencies of origins of DNA replication from time-course copy number variation data

Por Luo, Huaien, Li, Juntao, Eshaghi, Majid, Liu, Jianhua, Karuturi, R Krishna Murthy
Publicado em 2010

multiClust: An R-package for Identifying Biologically Relevant Clusters in Cancer Transcriptome Profiles

Por Lawlor, Nathan, Fabbri, Alec, Guan, Peiyong, George, Joshy, Karuturi, R. Krishna Murthy
Publicado no Cancer Inform (2016)

Adaptive expression responses in the Pol-γ null strain of S. pombe depleted of mitochondrial genome

Por Chu, Zhaoqing, Li, Juntao, Eshaghi, Majid, Karuturi, R Krishna Murthy, Lin, Kui, Liu, Jianhua
Publicado em 2007

Transcriptomic Analyses of Sexual Dimorphism of the Zebrafish Liver and the Effect of Sex Hormones

Por Zheng, Weiling, Xu, Hongyan, Lam, Siew Hong, Luo, Huaien, Karuturi, R. Krishna Murthy, Gong, Zhiyuan
Publicado em 2013

Zebrafish Whole-Adult-Organism Chemogenomics for Large-Scale Predictive and Discovery Chemical Biology

Por Lam, Siew Hong, Mathavan, Sinnakarupan, Tong, Yan, Li, Haixia, Karuturi, R. Krishna Murthy, Wu, Yilian, Vega, Vinsensius B., Liu, Edison T., Gong, Zhiyuan
Publicado em 2008

Mouse strain specific gene expression differences for illumina microarray expression profiling in embryos

Por Kraus, Petra, Xing, Xing, Lim, Siew Lan, Fun, Max E, Sivakamasundari, V, Yap, Sook Peng, Lee, Haixia, Karuturi, R Krishna Murthy, Lufkin, Thomas
Publicado em 2012

Identification of Cell Cycle-regulated Genes in Fission Yeast

Por Peng, Xu, Karuturi, R. Krishna Murthy, Miller, Lance D., Lin, Kui, Jia, Yonghui, Kondu, Pinar, Wang, Long, Wong, Lim-Soon, Liu, Edison T., Balasubramanian, Mohan K., Liu, Jianhua
Publicado em 2005

Systematic Deletion Analysis of Fission Yeast Protein Kinases

Por Bimbó, Andrea, Jia, Yonghui, Poh, Siew Lay, Karuturi, R. Krishna Murthy, den Elzen, Nicole, Peng, Xu, Zheng, Liling, O'Connell, Matthew, Liu, Edison T., Balasubramanian, Mohan K., Liu, Jianhua
Publicado em 2005

Bioinformatics Core Survey Highlights the Challenges Facing Data Analysis Facilities

Por Dragon, Julie A., Gates, Chris, Sui, Shannan Ho, Hutchinson, John N., Karuturi, R. Krishna Murthy, Kucukural, Alper, Polson, Shawn, Riva, Alberto, Settles, Matthew Lee, Thimmapuram, Jyothi, Levine, Stuart S.
Publicado no J Biomol Tech (2020)

REST Regulates Distinct Transcriptional Networks in Embryonic and Neural Stem Cells

Por Johnson, Rory, Teh, Christina Hui-leng, Kunarso, Galih, Wong, Kee Yew, Srinivasan, Gopalan, Cooper, Megan L, Volta, Manuela, Chan, Sarah Su-ling, Lipovich, Leonard, Pollard, Steven M, Karuturi, R. Krishna Murthy, Wei, Chia-lin, Buckley, Noel J, Stanton, Lawrence W
Publicado em 2008

Genomic data analysis workflows for tumors from patient-derived xenografts (PDXs): challenges and guidelines

Por Woo, Xing Yi, Srivastava, Anuj, Graber, Joel H., Yadav, Vinod, Sarsani, Vishal Kumar, Simons, Al, Beane, Glen, Grubb, Stephen, Ananda, Guruprasad, Liu, Rangjiao, Stafford, Grace, Chuang, Jeffrey H., Airhart, Susan D., Karuturi, R. Krishna Murthy, George, Joshy, Bult, Carol J.
Publicado no BMC Med Genomics (2019)

High-resolution deconstruction of evolution induced by chemotherapy treatments in breast cancer xenografts

Por Kim, Hyunsoo, Kumar, Pooja, Menghi, Francesca, Noorbakhsh, Javad, Cerveira, Eliza, Ryan, Mallory, Zhu, Qihui, Ananda, Guruprasad, George, Joshy, Chen, Henry C., Mockus, Susan, Zhang, Chengsheng, Yang, Yan, Keck, James, Karuturi, R. Krishna Murthy, Bult, Carol J., Lee, Charles, Liu, Edison T., Chuang, Jeffrey H.
Publicado no Sci Rep (2018)

Systems consequences of amplicon formation in human breast cancer

Por Inaki, Koichiro, Menghi, Francesca, Woo, Xing Yi, Wagner, Joel P., Jacques, Pierre-Étienne, Lee, Yi Fang, Shreckengast, Phung Trang, Soon, Wendy WeiJia, Malhotra, Ankit, Teo, Audrey S.M., Hillmer, Axel M., Khng, Alexis Jiaying, Ruan, Xiaoan, Ong, Swee Hoe, Bertrand, Denis, Nagarajan, Niranjan, Karuturi, R. Krishna Murthy, Hidalgo Miranda, Alfredo, Liu, Edison T.
Publicado em 2014

An Oestrogen Receptor α-bound Human Chromatin Interactome

Por Fullwood, Melissa J., Liu, Mei Hui, Pan, You Fu, Liu, Jun, Han, Xu, Mohamed, Yusoff Bin, Orlov, Yuriy L., Velkov, Stoyan, Ho, Andrea, Mei, Poh Huay, Chew, Elaine G. Y., Huang, Phillips Yao Hui, Welboren, Willem-Jan, Han, Yuyuan, Ooi, Hong-Sain, Ariyaratne, Pramila N., Vega, Vinsensius B., Luo, Yanquan, Tan, Peck Yean, Choy, Pei Ye, Wansa, K. D. Senali Abayratna, Zhao, Bing, Lim, Kar Sian, Leow, Shi Chi, Yow, Jit Sin, Joseph, Roy, Li, Haixia, Desai, Kartiki V., Thomsen, Jane S., Lee, Yew Kok, Karuturi, R. Krishna Murthy, Herve, Thoreau, Bourque, Guillaume, Stunnenberg, Hendrik G., Ruan, Xiaoan, Cacheux-Rataboul, Valere, Sung, Wing-Kin, Liu, Edison T., Wei, Chia-Lin, Cheung, Edwin, Ruan, Yijun
Publicado em 2009