Solving the influence maximization problem reveals regulatory organization of the yeast cell cycle

Por Gibbs, David L., Shmulevich, Ilya
Publicado no PLoS Comput Biol (2017)

Multi-omic network signatures of disease

Por Gibbs, David L., Gralinski, Lisa, Baric, Ralph S., McWeeney, Shannon K.
Publicado em 2014

Flexibility of Boolean Network Reservoir Computers in Approximating Arbitrary Recursive and Non-Recursive Binary Filters

Por Echlin, Moriah, Aguilar, Boris, Notarangelo, Max, Gibbs, David L., Shmulevich, Ilya
Publicado no Entropy (Basel) (2018)

Evaluation of the Biomic V3 Microbiology System for Identification of Selected Species on BBL CHROMagar Orientation Agar and CHROMagar MRSA Medium

Por Baron, Ellen Jo, D'Souza, Holly, Qi Wang, Andrew, Gibbs, David L.
Publicado em 2008

Combining dependent P-values with an empirical adaptation of Brown’s method

Por Poole, William, Gibbs, David L., Shmulevich, Ilya, Bernard, Brady, Knijnenburg, Theo A.
Publicado no Bioinformatics (2016)

Intrinsic Genetic and Transcriptomic Patterns Reflect Tumor Immune Subtypes Facilitating Exploring Possible Combinatory Therapy

Por Xu, Yong, Li, Daixi, Liu, Zhenhao, Gibbs, David L., Xie, Lu, Qin, Guangrong
Publicado no Front Mol Biosci (2020)

Using Incomplete Trios to Boost Confidence in Family Based Association Studies

Por Dhankani, Varsha, Gibbs, David L., Knijnenburg, Theo, Kramer, Roger, Vockley, Joseph, Niederhuber, John, Shmulevich, Ilya, Bernard, Brady
Publicado no Front Genet (2016)

Protein co-expression network analysis (ProCoNA)

Por Gibbs, David L, Baratt, Arie, Baric, Ralph S, Kawaoka, Yoshihiro, Smith, Richard D, Orwoll, Eric S, Katze, Michael G, McWeeney, Shannon K
Publicado em 2013

A Pan-Cancer Approach to Predict Responsiveness to Immune Checkpoint Inhibitors by Machine Learning

Por Polano, Maurizio, Chierici, Marco, Dal Bo, Michele, Gentilini, Davide, Di Cintio, Federica, Baboci, Lorena, Gibbs, David L., Furlanello, Cesare, Toffoli, Giuseppe
Publicado no Cancers (Basel) (2019)

Comparison of the Susceptibilities of Candida spp. to Fluconazole and Voriconazole in a 4-Year Global Evaluation Using Disk Diffusion

Por Hazen, Kevin C., Baron, Ellen Jo, Lopes Colombo, Arnaldo, Girmenia, Corrado, Sanchez-Sousa, Aurora, del Palacio, Amalia, de Bedout, Catalina, Gibbs, David L.
Publicado em 2003

ADAPTS: Automated deconvolution augmentation of profiles for tissue specific cells

Por Danziger, Samuel A., Gibbs, David L., Shmulevich, Ilya, McConnell, Mark, Trotter, Matthew W. B., Schmitz, Frank, Reiss, David J., Ratushny, Alexander V.
Publicado no PLoS One (2019)

A generalizable data-driven multicellular model of pancreatic ductal adenocarcinoma

Por Aguilar, Boris, Gibbs, David L, Reiss, David J, McConnell, Mark, Danziger, Samuel A, Dervan, Andrew, Trotter, Matthew, Bassett, Douglas, Hershberg, Robert, Ratushny, Alexander V, Shmulevich, Ilya
Publicado no Gigascience (2020)

The ISB Cancer Genomics Cloud: A Flexible Cloud-based Platform for Cancer Genomics Research

Por Reynolds, Sheila M., Miller, Michael, Lee, Phyliss, Leinonen, Kalle, Paquette, Suzanne M., Rodebaugh, Zack, Hahn, Abigail, Gibbs, David L., Slagel, Joseph, Longabaugh, William J., Dhankani, Varsha, Reyes, Madelyn, Pihl, Todd, Backus, Mark, Bookman, Matthew, Deflaux, Nicole, Bingham, Jonathan, Pot, David, Shmulevich, Ilya
Publicado no Cancer Res (2017)

Genomic and molecular characterization of preterm birth

Por Knijnenburg, Theo A., Vockley, Joseph G., Chambwe, Nyasha, Gibbs, David L., Humphries, Crystal, Huddleston, Kathi C., Klein, Elisabeth, Kothiyal, Prachi, Tasseff, Ryan, Dhankani, Varsha, Bodian, Dale L., Wong, Wendy S. W., Glusman, Gustavo, Mauldin, Denise E., Miller, Michael, Slagel, Joseph, Elasady, Summer, Roach, Jared C., Kramer, Roger, Leinonen, Kalle, Linthorst, Jasper, Baveja, Rajiv, Baker, Robin, Solomon, Benjamin D., Eley, Greg, Iyer, Ramaswamy K., Maxwell, George L., Bernard, Brady, Shmulevich, Ilya, Hood, Leroy, Niederhuber, John E.
Publicado no Proc Natl Acad Sci U S A (2019)

Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics

Por Ding, Li, Bailey, Matthew H., Porta-Pardo, Eduard, Thorsson, Vesteinn, Colaprico, Antonio, Bertrand, Denis, Gibbs, David L., Weerasinghe, Amila, Huang, Kuan-lin, Tokheim, Collin, Cortés-Ciriano, Isidro, Jayasinghe, Reyka, Chen, Feng, Yu, Lihua, Sun, Sam, Olsen, Catharina, Kim, Jaegil, Taylor, Alison M., Cherniack, Andrew D., Akbani, Rehan, Suphavilai, Chayaporn, Nagarajan, Niranjan, Stuart, Josh M., Mills, Gordon B, Wyczalkowski, Matthew A., Vincent, Benjamin, Hutter, Carolyn M., Zenklusen, Jean Claude, Hoadley, Katherine A., Wendl, Michael C., Shmulevich, llya, Lazar, Alexander J., Wheeler, David, Getz, Gad
Publicado no Cell (2018)

The Immune Landscape of Cancer

Por Thorsson, Vesteinn, Gibbs, David L., Brown, Scott D., Wolf, Denise, Bortone, Dante S., Yang, Tai-Hsien Ou, Porta-Pardo, Eduard, Gao, Galen, Plaisier, Christopher L., Eddy, James A, Ziv, Elad, Culhane, Aedin C., Paull, Evan O., Sivakumar, I.K. Ashok, Gentles, Andrew J., Malhotra, Raunaq, Farshidfar, Farshad, Colaprico, Antonio, Parker, Joel S., Mose, Lisle E., Vo, Nam Sy, Liu, Jianfang, Liu, Yuexin, Rader, Janet, Dhankani, Varsha, Reynolds, Sheila M., Bowlby, Reanne, Califano, Andrea, Cherniack, Andrew D., Anastassiou, Dimitris, Bedognetti, Davide, Rao, Arvind, Chen, Ken, Krasnitz, Alexander, Hu, Hai, Malta, Tathiane M., Noushmehr, Houtan, Pedamallu, Chandra Sekhar, Bullman, Susan, Ojesina, Akinyemi I., Lamb, Andrew, Zhou, Wanding, Shen, Hui, Choueiri, Toni K., Weinstein, John N., Guinney, Justin, Saltz, Joel, Holt, Robert A., Rabkin, Charles E., Lazar, Alex J., Serody, Jonathan S., Demicco, Elizabeth G., Disis, Mary L., Vincent, Benjamin G., Shmulevich, llya
Publicado no Immunity (2018)

Integrative Molecular Characterization of Malignant Pleural Mesothelioma

Por Hmeljak, Julija, Sanchez-Vega, Francisco, Hoadley, Katherine A., Shih, Juliann, Stewart, Chip, Heiman, David, Tarpey, Patrick, Danilova, Ludmila, Drill, Esther, Gibb, Ewan A., Bowlby, Reanne, Kanchi, Rupa, Osmanbeyoglu, Hatice U., Sekido, Yoshitaka, Takeshita, Jumpei, Newton, Yulia, Graim, Kiley, Gupta, Manaswi, Gay, Carl M., Diao, Lixia, Gibbs, David L., Thorsson, Vesteinn, Iype, Lisa, Kantheti, Havish, Severson, David T., Ravegnini, Gloria, Desmeules, Patrice, Jungbluth, Achim A., Travis, William D., Dacic, Sanja, Chirieac, Lucian R., Galateau-Sallé, Françoise, Fujimoto, Junya, Husain, Aliya N., Silveira, Henrique C., Rusch, Valerie W., Rintoul, Robert C., Pass, Harvey, Kindler, Hedy, Zauderer, Marjorie G., Kwiatkowski, David J., Bueno, Raphael, Tsao, Anne S., Creaney, Jenette, Lichtenberg, Tara, Leraas, Kristen, Bowen, Jay, Felau, Ina, Zenklusen, Jean Claude, Akbani, Rehan, Cherniack, Andrew D., Byers, Lauren A., Noble, Michael S., Fletcher, Jonathan A., Robertson, Gordon, Shen, Ronglai, Aburatani, Hiroyuki, Robinson, Bruce W., Campbell, Peter, Ladanyi, Marc
Publicado no Cancer Discov (2018)