Single-Cell DNA Methylome Sequencing and Bioinformatic Inference of Epigenomic Cell-State Dynamics

द्वारा Farlik, Matthias, Sheffield, Nathan C., Nuzzo, Angelo, Datlinger, Paul, Schönegger, Andreas, Klughammer, Johanna, Bock, Christoph
में प्रकाशित Cell Rep (2015)

Differential DNA Methylation Analysis without a Reference Genome

द्वारा Klughammer, Johanna, Datlinger, Paul, Printz, Dieter, Sheffield, Nathan C., Farlik, Matthias, Hadler, Johanna, Fritsch, Gerhard, Bock, Christoph
में प्रकाशित Cell Rep (2015)

Single‐cell transcriptomes reveal characteristic features of human pancreatic islet cell types

द्वारा Li, Jin, Klughammer, Johanna, Farlik, Matthias, Penz, Thomas, Spittler, Andreas, Barbieux, Charlotte, Berishvili, Ekaterine, Bock, Christoph, Kubicek, Stefan
में प्रकाशित EMBO Rep (2015)

Comparative Genome Sequencing Reveals Within-Host Genetic Changes in Neisseria meningitidis during Invasive Disease

द्वारा Klughammer, Johanna, Dittrich, Marcus, Blom, Jochen, Mitesser, Vera, Vogel, Ulrich, Frosch, Matthias, Goesmann, Alexander, Müller, Tobias, Schoen, Christoph
में प्रकाशित PLoS One (2017)

PATH-43. SHAPE-SHIFTERS IN GLIOBLASTOMA – SECONDARY GLIOSARCOMAS DIFFER BY TUMOR CELL INTRINSIC PROPERTIES INCLUDING AN INFLAMMATORY PHENOTYPE

द्वारा Kiesel, Barbara, Roetzer, Thomas, Klughammer, Johanna, Baumann, Bernhard, Furtner, Julia, Peter, Nadine, Marosi, Christine, Widhalm, Georg, Woehrer, Adelheid
में प्रकाशित Neuro Oncol (2017)

Divergent Expression Regulation of Gonad Development Genes in Medaka Shows Incomplete Conservation of the Downstream Regulatory Network of Vertebrate Sex Determination

द्वारा Herpin, Amaury, Adolfi, Mateus C., Nicol, Barbara, Hinzmann, Maria, Schmidt, Cornelia, Klughammer, Johanna, Engel, Mareen, Tanaka, Minoru, Guiguen, Yann, Schartl, Manfred
प्रकाशित 2013

Pooled CRISPR screening with single-cell transcriptome read-out

द्वारा Datlinger, Paul, Rendeiro, André F, Schmidl, Christian, Krausgruber, Thomas, Traxler, Peter, Klughammer, Johanna, Schuster, Linda C, Kuchler, Amelie, Alpar, Donat, Bock, Christoph
में प्रकाशित Nat Methods (2017)

Parental micronutrient deficiency distorts liver DNA methylation and expression of lipid genes associated with a fatty-liver-like phenotype in offspring

द्वारा Skjærven, Kaja H., Jakt, Lars Martin, Fernandes, Jorge M. O., Dahl, John Arne, Adam, Anne-Catrin, Klughammer, Johanna, Bock, Christoph, Espe, Marit
में प्रकाशित Sci Rep (2018)

Paternal chronic colitis causes epigenetic inheritance of susceptibility to colitis

द्वारा Tschurtschenthaler, Markus, Kachroo, Priyadarshini, Heinsen, Femke-Anouska, Adolph, Timon Erik, Rühlemann, Malte Christoph, Klughammer, Johanna, Offner, Felix Albert, Ammerpohl, Ole, Krueger, Felix, Smallwood, Sébastien, Szymczak, Silke, Kaser, Arthur, Franke, Andre
में प्रकाशित Sci Rep (2016)

Specification of tissue-resident macrophages during organogenesis

द्वारा Mass, Elvira, Ballesteros, Ivan, Farlik, Matthias, Halbritter, Florian, Günther, Patrick, Crozet, Lucile, Jacome-Galarza, Christian E., Händler, Kristian, Klughammer, Johanna, Kobayashi, Yasuhiro, Gomez-Perdiguero, Elisa, Schultze, Joachim L., Beyer, Marc, Bock, Christoph, Geissmann, Frederic
में प्रकाशित Science (2016)

DNA Methylation Dynamics of Human Hematopoietic Stem Cell Differentiation

द्वारा Farlik, Matthias, Halbritter, Florian, Müller, Fabian, Choudry, Fizzah A., Ebert, Peter, Klughammer, Johanna, Farrow, Samantha, Santoro, Antonella, Ciaurro, Valerio, Mathur, Anthony, Uppal, Rakesh, Stunnenberg, Hendrik G., Ouwehand, Willem H., Laurenti, Elisa, Lengauer, Thomas, Frontini, Mattia, Bock, Christoph
में प्रकाशित Cell Stem Cell (2016)

High-definition spatial transcriptomics for in situ tissue profiling

द्वारा Vickovic, Sanja, Eraslan, Gökcen, Salmén, Fredrik, Klughammer, Johanna, Stenbeck, Linnea, Schapiro, Denis, Äijö, Tarmo, Bonneau, Richard, Bergenstråhle, Ludvig, Navarro, José Fernandéz, Gould, Joshua, Griffin, Gabriel K., Borg, Åke, Ronaghi, Mostafa, Frisén, Jonas, Lundeberg, Joakim, Regev, Aviv, Ståhl, Patrik L
में प्रकाशित Nat Methods (2019)

EPCO-14. DECIPHERING DIFFERENTIATION HIERARCHIES, HERITABILITY AND PLASTICITY IN HUMAN GLIOMAS VIA SINGLE-CELL MULTI-OMICS

द्वारा Gaiti, Federico, Chaligne, Ronan, Silverbush, Dana, Schiffman, Joshua, Weisman, Hannah, Kluegel, lloyd, Gritsch, Simon, Deochand, Sunil, Richman, Alyssa, Klughammer, Johanna, Biancalani, Tommaso, Muus, Christoph, Sheridan, Caroline, Alonso, Alicia, Izzo, Franco, Rozenblatt-Rosen, Orit, Regev, Aviv, Suva, Mario, Landau, Dan
में प्रकाशित Neuro Oncol (2020)

The ERBB-STAT3 Axis Drives Tasmanian Devil Facial Tumor Disease

द्वारा Kosack, Lindsay, Wingelhofer, Bettina, Popa, Alexandra, Orlova, Anna, Agerer, Benedikt, Vilagos, Bojan, Majek, Peter, Parapatics, Katja, Lercher, Alexander, Ringler, Anna, Klughammer, Johanna, Smyth, Mark, Khamina, Kseniya, Baazim, Hatoon, de Araujo, Elvin D., Rosa, David A., Park, Jisung, Tin, Gary, Ahmar, Siawash, Gunning, Patrick T., Bock, Christoph, Siddle, Hannah V., Woods, Gregory M., Kubicek, Stefan, Murchison, Elizabeth P., Bennett, Keiryn L., Moriggl, Richard, Bergthaler, Andreas
में प्रकाशित Cancer Cell (2019)

DNA methylation heterogeneity defines a disease spectrum in Ewing sarcoma

द्वारा Sheffield, Nathan C, Pierron, Gaelle, Klughammer, Johanna, Datlinger, Paul, Schönegger, Andreas, Schuster, Michael, Hadler, Johanna, Surdez, Didier, Guillemot, Delphine, Lapouble, Eve, Freneaux, Paul, Champigneulle, Jacqueline, Bouvier, Raymonde, Walder, Diana, Ambros, Ingeborg M, Hutter, Caroline, Sorz, Eva, Amaral, Ana T, de Álava, Enrique, Schallmoser, Katharina, Strunk, Dirk, Rinner, Beate, Liegl-Atzwanger, Bernadette, Huppertz, Berthold, Leithner, Andreas, de Pinieux, Gonzague, Terrier, Philippe, Laurence, Valérie, Michon, Jean, Ladenstein, Ruth, Holter, Wolfgang, Windhager, Reinhard, Dirksen, Uta, Ambros, Peter F, Delattre, Olivier, Kovar, Heinrich, Bock, Christoph, Tomazou, Eleni M
में प्रकाशित Nat Med (2017)

Artemisinins Target GABA(A) Receptor Signaling and Impair α Cell Identity

द्वारा Li, Jin, Casteels, Tamara, Frogne, Thomas, Ingvorsen, Camilla, Honoré, Christian, Courtney, Monica, Huber, Kilian V.M., Schmitner, Nicole, Kimmel, Robin A., Romanov, Roman A., Sturtzel, Caterina, Lardeau, Charles-Hugues, Klughammer, Johanna, Farlik, Matthias, Sdelci, Sara, Vieira, Andhira, Avolio, Fabio, Briand, François, Baburin, Igor, Májek, Peter, Pauler, Florian M., Penz, Thomas, Stukalov, Alexey, Gridling, Manuela, Parapatics, Katja, Barbieux, Charlotte, Berishvili, Ekaterine, Spittler, Andreas, Colinge, Jacques, Bennett, Keiryn L., Hering, Steffen, Sulpice, Thierry, Bock, Christoph, Distel, Martin, Harkany, Tibor, Meyer, Dirk, Superti-Furga, Giulio, Collombat, Patrick, Hecksher-Sørensen, Jacob, Kubicek, Stefan
में प्रकाशित Cell (2017)

Expansion Sequencing: Spatially Precise In Situ Transcriptomics in Intact Biological Systems

द्वारा Alon, Shahar, Goodwin, Daniel R, Sinha, Anubhav, Wassie, Asmamaw T, Chen, Fei, Daugharthy, Evan R, Bando, Yosuke, Kajita, Atsushi, Xue, Andrew G, Marrett, Karl, Prior, Robert, Cui, Yi, Payne, Andrew C, Yao, Chun-Chen, Suk, Ho-Jun, Wang, Ru, Yu, Chih-Chieh (Jay), Tillberg, Paul, Reginato, Paul, Pak, Nikita, Liu, Songlei, Punthambaker, Sukanya, Iyer, Eswar P. R., Kohman, Richie E, Miller, Jeremy A, Lein, Ed S, Lako, Ana, Cullen, Nicole, Rodig, Scott, Helvie, Karla, Abravanel, Daniel L, Wagle, Nikhil, Johnson, Bruce E, Klughammer, Johanna, Slyper, Michal, Waldman, Julia, Jané-Valbuena, Judit, Rozenblatt-Rosen, Orit, Regev, Aviv, Church, George M, Marblestone, Adam H, Boyden, Edward S
में प्रकाशित Science (2021)

The DNA methylation landscape of glioblastoma disease progression shows extensive heterogeneity in time and space

द्वारा Klughammer, Johanna, Kiesel, Barbara, Roetzer, Thomas, Fortelny, Nikolaus, Kuchler, Amelie, Nenning, Karl-Heinz, Furtner, Julia, Sheffield, Nathan C., Datlinger, Paul, Peter, Nadine, Nowosielski, Martha, Augustin, Marco, Mischkulnig, Mario, Ströbel, Thomas, Alpar, Donat, Ergüner, Bekir, Senekowitsch, Martin, Moser, Patrizia, Freyschlag, Christian F., Kerschbaumer, Johannes, Thomé, Claudius, Grams, Astrid E., Stockhammer, Günther, Kitzwoegerer, Melitta, Oberndorfer, Stefan, Marhold, Franz, Weis, Serge, Trenkler, Johannes, Buchroithner, Johanna, Pichler, Josef, Haybaeck, Johannes, Krassnig, Stefanie, Mahdy Ali, Kariem, von Campe, Gord, Payer, Franz, Sherif, Camillo, Preiser, Julius, Hauser, Thomas, Winkler, Peter A., Kleindienst, Waltraud, Würtz, Franz, Brandner-Kokalj, Tanisa, Stultschnig, Martin, Schweiger, Stefan, Dieckmann, Karin, Preusser, Matthias, Langs, Georg, Baumann, Bernhard, Knosp, Engelbert, Widhalm, Georg, Marosi, Christine, Hainfellner, Johannes A., Woehrer, Adelheid, Bock, Christoph
में प्रकाशित Nat Med (2018)

A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

द्वारा Slyper, Michal, Porter, Caroline B. M., Ashenberg, Orr, Waldman, Julia, Drokhlyansky, Eugene, Wakiro, Isaac, Smillie, Christopher, Smith-Rosario, Gabriela, Wu, Jingyi, Dionne, Danielle, Vigneau, Sébastien, Jané-Valbuena, Judit, Tickle, Timothy L., Napolitano, Sara, Su, Mei-Ju, Patel, Anand G., Karlstrom, Asa, Gritsch, Simon, Nomura, Masashi, Waghray, Avinash, Gohil, Satyen H., Tsankov, Alexander M., Jerby-Arnon, Livnat, Cohen, Ofir, Klughammer, Johanna, Rosen, Yanay, Gould, Joshua, Nguyen, Lan, Hofree, Matan, Tramontozzi, Peter J., Li, Bo, Wu, Catherine J., Izar, Benjamin, Haq, Rizwan, Hodi, F. Stephen, Yoon, Charles H., Hata, Aaron N., Baker, Suzanne J., Suvà, Mario L., Bueno, Raphael, Stover, Elizabeth H., Clay, Michael R., Dyer, Michael A., Collins, Natalie B., Matulonis, Ursula A., Wagle, Nikhil, Johnson, Bruce E., Rotem, Asaf, Rozenblatt-Rosen, Orit, Regev, Aviv
में प्रकाशित Nat Med (2020)

Author Correction: A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

द्वारा Slyper, Michal, Porter, Caroline B. M., Ashenberg, Orr, Waldman, Julia, Drokhlyansky, Eugene, Wakiro, Isaac, Smillie, Christopher, Smith-Rosario, Gabriela, Wu, Jingyi, Dionne, Danielle, Vigneau, Sébastien, Jané-Valbuena, Judit, Tickle, Timothy L., Napolitano, Sara, Su, Mei-Ju, Patel, Anand G., Karlstrom, Asa, Gritsch, Simon, Nomura, Masashi, Waghray, Avinash, Gohil, Satyen H., Tsankov, Alexander M., Jerby-Arnon, Livnat, Cohen, Ofir, Klughammer, Johanna, Rosen, Yanay, Gould, Joshua, Nguyen, Lan, Hofree, Matan, Tramontozzi, Peter J., Li, Bo, Wu, Catherine J., Izar, Benjamin, Haq, Rizwan, Hodi, F. Stephen, Yoon, Charles H., Hata, Aaron N., Baker, Suzanne J., Suvà, Mario L., Bueno, Raphael, Stover, Elizabeth H., Clay, Michael R., Dyer, Michael A., Collins, Natalie B., Matulonis, Ursula A., Wagle, Nikhil, Johnson, Bruce E., Rotem, Asaf, Rozenblatt-Rosen, Orit, Regev, Aviv
में प्रकाशित Nat Med (2020)