EPCO-23. COMPARATIVE TRANSCRIPTOMICS TO IDENTIFY TARGETED THERAPY CANDIDATES IN HIGH GRADE GLIOMA

ανά Hundley, Kelsey, Vaske, Olena, Lyle, Geoff, Learned, Katrina, Beale, Holly, Kephart, Ellen, De Loose, Annick, Lee, Madison, Day, J D, Rodriguez, Analiz
Τόπος έκδοσης Neuro Oncol (2020)

Cloud-based uniform ChIP-Seq processing tools for modENCODE and ENCODE

ανά Trinh, Quang M, Jen, Fei-Yang Arthur, Zhou, Ziru, Chu, Kar Ming, Perry, Marc D, Kephart, Ellen T, Contrino, Sergio, Ruzanov, Peter, Stein, Lincoln D
Έκδοση 2013

GENE-11. SHARED LONG NON-CODING RNA DYSREGULATION IN HISTONE H3 K27M GLIOMAS AND PF-A EPENDYMOMAS

ανά Sanders, Lauren, Cheney, Allison, Field, Andrew, Beale, Holly, Kephart, Ellen, Learned, Katrina, Bjork, Isabel, Durbin, Ann, Lyle, Geoff, Pfeil, Jacob, Salama, Sofie, Haussler, David, Vaske, Olena
Τόπος έκδοσης Neuro Oncol (2019)

DIPG-07. GENOMIC ANALYSIS METHODS FOR IDENTIFICATION OF CANCER DRIVER PATHWAYS IN CHILDHOOD BRAIN TUMORS

ανά Sanders, Lauren, Rose-Dey, Brittany, Beale, Holly, Pfeil, Jacob, Kephart, Ellen, Learned, Katrina, Durbin, Ann, Bjork, Isabel, Currie, Rob, Morozova, Olena, Agnihotri, Sameer, Salama, Sofie, Haussler, David
Τόπος έκδοσης Neuro Oncol (2018)

Barriers to accessing public cancer genomic data

ανά Learned, Katrina, Durbin, Ann, Currie, Robert, Kephart, Ellen Towle, Beale, Holly C., Sanders, Lauren M., Pfeil, Jacob, Goldstein, Theodore C., Salama, Sofie R., Haussler, David, Vaske, Olena Morozova, Bjork, Isabel M.
Τόπος έκδοσης Sci Data (2019)

Identification of a differentiation stall in epithelial mesenchymal transition in histone H3–mutant diffuse midline glioma

ανά Sanders, Lauren M, Cheney, Allison, Seninge, Lucas, van den Bout, Anouk, Chen, Marissa, Beale, Holly C, Kephart, Ellen Towle, Pfeil, Jacob, Learned, Katrina, Lyle, A Geoffrey, Bjork, Isabel, Haussler, David, Salama, Sofie R, Vaske, Olena M
Τόπος έκδοσης Gigascience (2020)

The modENCODE Data Coordination Center: lessons in harvesting comprehensive experimental details

ανά Washington, Nicole L., Stinson, E. O., Perry, Marc D., Ruzanov, Peter, Contrino, Sergio, Smith, Richard, Zha, Zheng, Lyne, Rachel, Carr, Adrian, Lloyd, Paul, Kephart, Ellen, McKay, Sheldon J., Micklem, Gos, Stein, Lincoln D., Lewis, Suzanna E.
Έκδοση 2011

The case for using mapped exonic non-duplicate reads when reporting RNA-sequencing depth: examples from pediatric cancer datasets

ανά Beale, Holly C, Roger, Jacquelyn M, Cattle, Matthew A, McKay, Liam T, Thompson, Drew K A, Learned, Katrina, Lyle, A Geoffrey, Kephart, Ellen T, Currie, Rob, Lam, Du Linh, Sanders, Lauren, Pfeil, Jacob, Vivian, John, Bjork, Isabel, Salama, Sofie R, Haussler, David, Vaske, Olena M
Τόπος έκδοσης Gigascience (2021)

modMine: flexible access to modENCODE data

ανά Contrino, Sergio, Smith, Richard N., Butano, Daniela, Carr, Adrian, Hu, Fengyuan, Lyne, Rachel, Rutherford, Kim, Kalderimis, Alex, Sullivan, Julie, Carbon, Seth, Kephart, Ellen T., Lloyd, Paul, Stinson, E. O., Washington, Nicole L., Perry, Marc D., Ruzanov, Peter, Zha, Zheng, Lewis, Suzanna E., Stein, Lincoln D., Micklem, Gos
Έκδοση 2012

Comparative RNA-seq analysis aids in diagnosis of a rare pediatric tumor

ανά Sanders, Lauren M., Rangaswami, Arun, Bjork, Isabel, Lam, Du Linh, Beale, Holly C., Kephart, Ellen Towle, Durbin, Ann, Learned, Katrina, Currie, Rob, Lyle, A. Geoffrey, Pfeil, Jacob, Shah, Avanthi Tayi, Lee, Alex G., Leung, Stanley G., Behroozfard, Inge H., Breese, Marcus R., Peralez, Jennifer, Hazard, Florette K., Lacayo, Norman, Spunt, Sheri L., Haussler, David, Salama, Sofie R., Sweet-Cordero, E. Alejandro, Vaske, Olena M.
Τόπος έκδοσης Cold Spring Harb Mol Case Stud (2019)

Comparative Tumor RNA Sequencing Analysis for Difficult-to-Treat Pediatric and Young Adult Patients With Cancer

ανά Vaske, Olena M., Bjork, Isabel, Salama, Sofie R., Beale, Holly, Tayi Shah, Avanthi, Sanders, Lauren, Pfeil, Jacob, Lam, Du L., Learned, Katrina, Durbin, Ann, Kephart, Ellen T., Currie, Rob, Newton, Yulia, Swatloski, Teresa, McColl, Duncan, Vivian, John, Zhu, Jingchun, Lee, Alex G., Leung, Stanley G., Spillinger, Aviv, Liu, Heng-Yi, Liang, Winnie S., Byron, Sara A., Berens, Michael E., Resnick, Adam C., Lacayo, Norman, Spunt, Sheri L., Rangaswami, Arun, Huynh, Van, Torno, Lilibeth, Plant, Ashley, Kirov, Ivan, Zabokrtsky, Keri B., Rassekh, S. Rod, Deyell, Rebecca J., Laskin, Janessa, Marra, Marco A., Sender, Leonard S., Mueller, Sabine, Sweet-Cordero, E. Alejandro, Goldstein, Theodore C., Haussler, David
Τόπος έκδοσης JAMA Netw Open (2019)

Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project

ανά Gerstein, Mark B., Lu, Zhi John, Van Nostrand, Eric L., Cheng, Chao, Arshinoff, Bradley I., Liu, Tao, Yip, Kevin Y., Robilotto, Rebecca, Rechtsteiner, Andreas, Ikegami, Kohta, Alves, Pedro, Chateigner, Aurelien, Perry, Marc, Morris, Mitzi, Auerbach, Raymond K., Feng, Xin, Leng, Jing, Vielle, Anne, Niu, Wei, Rhrissorrakrai, Kahn, Agarwal, Ashish, Alexander, Roger P., Barber, Galt, Brdlik, Cathleen M., Brennan, Jennifer, Brouillet, Jeremy Jean, Carr, Adrian, Cheung, Ming-Sin, Clawson, Hiram, Contrino, Sergio, Dannenberg, Luke O., Dernburg, Abby F., Desai, Arshad, Dick, Lindsay, Dosé, Andréa C., Du, Jiang, Egelhofer, Thea, Ercan, Sevinc, Euskirchen, Ghia, Ewing, Brent, Feingold, Elise A., Gassmann, Reto, Good, Peter J., Green, Phil, Gullier, Francois, Gutwein, Michelle, Guyer, Mark S., Habegger, Lukas, Han, Ting, Henikoff, Jorja G., Henz, Stefan R., Hinrichs, Angie, Holster, Heather, Hyman, Tony, Iniguez, A. Leo, Janette, Judith, Jensen, Morten, Kato, Masaomi, Kent, W. James, Kephart, Ellen, Khivansara, Vishal, Khurana, Ekta, Kim, John K., Kolasinska-Zwierz, Paulina, Lai, Eric C., Latorre, Isabel, Leahey, Amber, Lewis, Suzanna, Lloyd, Paul, Lochovsky, Lucas, Lowdon, Rebecca F., Lubling, Yaniv, Lyne, Rachel, MacCoss, Michael, Mackowiak, Sebastian D., Mangone, Marco, McKay, Sheldon, Mecenas, Desirea, Merrihew, Gennifer, Miller, David M., Muroyama, Andrew, Murray, John I., Ooi, Siew-Loon, Pham, Hoang, Phippen, Taryn, Preston, Elicia A., Rajewsky, Nikolaus, Rätsch, Gunnar, Rosenbaum, Heidi, Rozowsky, Joel, Rutherford, Kim, Ruzanov, Peter, Sarov, Mihail, Sasidharan, Rajkumar, Sboner, Andrea, Scheid, Paul, Segal, Eran, Shin, Hyunjin, Shou, Chong, Slack, Frank J., Slightam, Cindie, Smith, Richard, Spencer, William C., Stinson, E. O., Taing, Scott, Takasaki, Teruaki, Vafeados, Dionne, Voronina, Ksenia, Wang, Guilin, Washington, Nicole L., Whittle, Christina M., Wu, Beijing, Yan, Koon-Kiu, Zeller, Georg, Zha, Zheng, Zhong, Mei, Zhou, Xingliang, Ahringer, Julie, Strome, Susan, Gunsalus, Kristin C., Micklem, Gos, Liu, X. Shirley, Reinke, Valerie, Kim, Stuart K., Hillier, LaDeana W., Henikoff, Steven, Piano, Fabio, Snyder, Michael, Stein, Lincoln, Lieb, Jason D., Waterston, Robert H.
Έκδοση 2010