Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans

Por Niu, Wei, Lu, Zhi John, Zhong, Mei, Sarov, Mihail, Murray, John I., Brdlik, Cathleen M., Janette, Judith, Chen, Chao, Alves, Pedro, Preston, Elicia, Slightham, Cindie, Jiang, Lixia, Hyman, Anthony A., Kim, Stuart K., Waterston, Robert H., Gerstein, Mark, Snyder, Michael, Reinke, Valerie
Publicado em 2011

Genome-Wide Identification of Binding Sites Defines Distinct Functions for Caenorhabditis elegans PHA-4/FOXA in Development and Environmental Response

Por Zhong, Mei, Niu, Wei, Lu, Zhi John, Sarov, Mihail, Murray, John I., Janette, Judith, Raha, Debasish, Sheaffer, Karyn L., Lam, Hugo Y. K., Preston, Elicia, Slightham, Cindie, Hillier, LaDeana W., Brock, Trisha, Agarwal, Ashish, Auerbach, Raymond, Hyman, Anthony A., Gerstein, Mark, Mango, Susan E., Kim, Stuart K., Waterston, Robert H., Reinke, Valerie, Snyder, Michael
Publicado em 2010

A genome scale resource for in vivo tag-based protein function exploration in C. elegans

Por Sarov, Mihail, Murray, John, Schanze, Kristin, Pozniakovski, Andrei, Niu, Wei, Angermann, Karolin, Hasse, Susanne, Rupprecht, Michaela, Vinis, Elisabeth, Tinney, Matthew, Preston, Elicia, Zinke, Andrea, Enst, Susanne, Teichgraber, Tina, Janette, Judith, Reis, Kadri, Janosch, Stephan, Schloissnig, Siegfried, Ejsmont, Radoslaw K., Slightam, Cindie, Xu, Xiao, Kim, Stuart K., Reinke, Valerie, Stewart, A. Francis, Snyder, Michael, Waterston, Robert, Hyman, Anthony A.
Publicado em 2012

Comparative analysis of regulatory information and circuits across distant species

Por Boyle, Alan P., Araya, Carlos L., Brdlik, Cathleen, Cayting, Philip, Cheng, Chao, Cheng, Yong, Gardner, Kathryn, Hillier, LaDeana, Janette, Judith, Jiang, Lixia, Kasper, Dionna, Kawli, Trupti, Kheradpour, Pouya, Kundaje, Anshul, Li, Jingyi Jessica, Ma, Lijia, Niu, Wei, Rehm, E. Jay, Rozowsky, Joel, Slattery, Matthew, Spokony, Rebecca, Terrell, Robert, Vafeados, Dionne, Wang, Daifeng, Weisdepp, Peter, Wu, Yi-Chieh, Xie, Dan, Yan, Koon-Kiu, Feingold, Elise A., Good, Peter J., Pazin, Michael J., Huang, Haiyan, Bickel, Peter J., Brenner, Steven E., Reinke, Valerie, Waterston, Robert H., Gerstein, Mark, White, Kevin P., Kellis, Manolis, Snyder, Michael
Publicado no Nature (2014)

Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project

Por Gerstein, Mark B., Lu, Zhi John, Van Nostrand, Eric L., Cheng, Chao, Arshinoff, Bradley I., Liu, Tao, Yip, Kevin Y., Robilotto, Rebecca, Rechtsteiner, Andreas, Ikegami, Kohta, Alves, Pedro, Chateigner, Aurelien, Perry, Marc, Morris, Mitzi, Auerbach, Raymond K., Feng, Xin, Leng, Jing, Vielle, Anne, Niu, Wei, Rhrissorrakrai, Kahn, Agarwal, Ashish, Alexander, Roger P., Barber, Galt, Brdlik, Cathleen M., Brennan, Jennifer, Brouillet, Jeremy Jean, Carr, Adrian, Cheung, Ming-Sin, Clawson, Hiram, Contrino, Sergio, Dannenberg, Luke O., Dernburg, Abby F., Desai, Arshad, Dick, Lindsay, Dosé, Andréa C., Du, Jiang, Egelhofer, Thea, Ercan, Sevinc, Euskirchen, Ghia, Ewing, Brent, Feingold, Elise A., Gassmann, Reto, Good, Peter J., Green, Phil, Gullier, Francois, Gutwein, Michelle, Guyer, Mark S., Habegger, Lukas, Han, Ting, Henikoff, Jorja G., Henz, Stefan R., Hinrichs, Angie, Holster, Heather, Hyman, Tony, Iniguez, A. Leo, Janette, Judith, Jensen, Morten, Kato, Masaomi, Kent, W. James, Kephart, Ellen, Khivansara, Vishal, Khurana, Ekta, Kim, John K., Kolasinska-Zwierz, Paulina, Lai, Eric C., Latorre, Isabel, Leahey, Amber, Lewis, Suzanna, Lloyd, Paul, Lochovsky, Lucas, Lowdon, Rebecca F., Lubling, Yaniv, Lyne, Rachel, MacCoss, Michael, Mackowiak, Sebastian D., Mangone, Marco, McKay, Sheldon, Mecenas, Desirea, Merrihew, Gennifer, Miller, David M., Muroyama, Andrew, Murray, John I., Ooi, Siew-Loon, Pham, Hoang, Phippen, Taryn, Preston, Elicia A., Rajewsky, Nikolaus, Rätsch, Gunnar, Rosenbaum, Heidi, Rozowsky, Joel, Rutherford, Kim, Ruzanov, Peter, Sarov, Mihail, Sasidharan, Rajkumar, Sboner, Andrea, Scheid, Paul, Segal, Eran, Shin, Hyunjin, Shou, Chong, Slack, Frank J., Slightam, Cindie, Smith, Richard, Spencer, William C., Stinson, E. O., Taing, Scott, Takasaki, Teruaki, Vafeados, Dionne, Voronina, Ksenia, Wang, Guilin, Washington, Nicole L., Whittle, Christina M., Wu, Beijing, Yan, Koon-Kiu, Zeller, Georg, Zha, Zheng, Zhong, Mei, Zhou, Xingliang, Ahringer, Julie, Strome, Susan, Gunsalus, Kristin C., Micklem, Gos, Liu, X. Shirley, Reinke, Valerie, Kim, Stuart K., Hillier, LaDeana W., Henikoff, Steven, Piano, Fabio, Snyder, Michael, Stein, Lincoln, Lieb, Jason D., Waterston, Robert H.
Publicado em 2010