A High-Resolution Whole-Genome Map of Key Chromatin Modifications in the Adult Drosophila melanogaster

Por Yin, Hang, Sweeney, Sarah, Raha, Debasish, Snyder, Michael, Lin, Haifan
Publicado em 2011

Combining RNA interference and kinase inhibitors against cell signalling components involved in cancer

Por O'Grady, Michael, Raha, Debasish, Hanson, Bonnie J, Bunting, Michaeline, Hanson, George T
Publicado em 2005

Accurate Identification and Analysis of Human mRNA Isoforms Using Deep Long Read Sequencing

Por Tilgner, Hagen, Raha, Debasish, Habegger, Lukas, Mohiuddin, Mohammed, Gerstein, Mark, Snyder, Michael
Publicado em 2013

A Major Epigenetic Programming Mechanism Guided by piRNAs

Por Huang, Xiao A., Yin, Hang, Sweeney, Sarah, Raha, Debasish, Snyder, Michael, Lin, Haifan
Publicado em 2013

The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing

Por Nagalakshmi, Ugrappa, Wang, Zhong, Waern, Karl, Shou, Chong, Raha, Debasish, Gerstein, Mark, Snyder, Michael
Publicado em 2008

Genome-wide chromatin occupancy analysis reveals a role for ASH2 in transcriptional pausing

Por Pérez-Lluch, Sílvia, Blanco, Enrique, Carbonell, Albert, Raha, Debasish, Snyder, Michael, Serras, Florenci, Corominas, Montserrat
Publicado em 2011

Genomic Binding Profiles of Functionally Distinct RNA Polymerase III Transcription Complexes in Human Cells

Por Moqtaderi, Zarmik, Wang, Jie, Raha, Debasish, White, Robert J., Snyder, Michael, Weng, Zhiping, Struhl, Kevin
Publicado em 2010

Close association of RNA polymerase II and many transcription factors with Pol III genes

Por Raha, Debasish, Wang, Zhong, Moqtaderi, Zarmik, Wu, Linfeng, Zhong, Guoneng, Gerstein, Mark, Struhl, Kevin, Snyder, Michael
Publicado em 2010

A highly integrated and complex PPARGC1A transcription factor binding network in HepG2 cells

Por Charos, Alexandra E., Reed, Brian D., Raha, Debasish, Szekely, Anna M., Weissman, Sherman M., Snyder, Michael
Publicado em 2012

Comparative annotation of functional regions in the human genome using epigenomic data

Por Won, Kyoung-Jae, Zhang, Xian, Wang, Tao, Ding, Bo, Raha, Debasish, Snyder, Michael, Ren, Bing, Wang, Wei
Publicado em 2013

Chromatin Architecture and Transcription Factor Binding Regulate Expression of Erythrocyte Membrane Protein Genes

Por Steiner, Laurie A., Maksimova, Yelena, Schulz, Vincent, Wong, Clara, Raha, Debasish, Mahajan, Milind C., Weissman, Sherman M., Gallagher, Patrick G.
Publicado em 2009

A Large Gene Network in Immature Erythroid Cells Is Controlled by the Myeloid and B Cell Transcriptional Regulator PU.1

Por Wontakal, Sandeep N., Guo, Xingyi, Will, Britta, Shi, Minyi, Raha, Debasish, Mahajan, Milind C., Weissman, Sherman, Snyder, Michael, Steidl, Ulrich, Zheng, Deyou, Skoultchi, Arthur I.
Publicado em 2011

Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements

Por Kundaje, Anshul, Kyriazopoulou-Panagiotopoulou, Sofia, Libbrecht, Max, Smith, Cheryl L., Raha, Debasish, Winters, Elliott E., Johnson, Steven M., Snyder, Michael, Batzoglou, Serafim, Sidow, Arend
Publicado em 2012

Dynamic transcriptomes during neural differentiation of human embryonic stem cells revealed by short, long, and paired-end sequencing

Por Wu, Jia Qian, Habegger, Lukas, Noisa, Parinya, Szekely, Anna, Qiu, Caihong, Hutchison, Stephen, Raha, Debasish, Egholm, Michael, Lin, Haifan, Weissman, Sherman, Cui, Wei, Gerstein, Mark, Snyder, Michael
Publicado em 2010

AlleleSeq: analysis of allele-specific expression and binding in a network framework

Por Rozowsky, Joel, Abyzov, Alexej, Wang, Jing, Alves, Pedro, Raha, Debasish, Harmanci, Arif, Leng, Jing, Bjornson, Robert, Kong, Yong, Kitabayashi, Naoki, Bhardwaj, Nitin, Rubin, Mark, Snyder, Michael, Gerstein, Mark
Publicado em 2011

Genome-Wide Identification of Binding Sites Defines Distinct Functions for Caenorhabditis elegans PHA-4/FOXA in Development and Environmental Response

Por Zhong, Mei, Niu, Wei, Lu, Zhi John, Sarov, Mihail, Murray, John I., Janette, Judith, Raha, Debasish, Sheaffer, Karyn L., Lam, Hugo Y. K., Preston, Elicia, Slightham, Cindie, Hillier, LaDeana W., Brock, Trisha, Agarwal, Ashish, Auerbach, Raymond, Hyman, Anthony A., Gerstein, Mark, Mango, Susan E., Kim, Stuart K., Waterston, Robert H., Reinke, Valerie, Snyder, Michael
Publicado em 2010

Extensive Promoter-centered Chromatin Interactions Provide a Topological Basis for Transcription Regulation

Por Li, Guoliang, Ruan, Xiaoan, Auerbach, Raymond K., Sandhu, Kuljeet Singh, Zheng, Meizhen, Wang, Ping, Poh, Huay Mei, Goh, Yufen, Lim, Joanne, Zhang, Jingyao, Sim, Hui Shan, Peh, Su Qin, Mulawadi, Fabianus Hendriyan, Ong, Chin Thing, Orlov, Yuriy L., Hong, Shuzhen, Zhang, Zhizhuo, Landt, Steve, Raha, Debasish, Euskirchen, Ghia, Wei, Chia-Lin, Ge, Weihong, Wang, Huaien, Davis, Carrie, Fisher, Katherine, Mortazavi, Ali, Gerstein, Mark, Gingeras, Thomas, Wold, Barbara, Sun, Yi, Fullwood, Melissa J., Cheung, Edwin, Liu, Edison, Sung, Wing-Kin, Snyder, Michael, Ruan, Yijun
Publicado em 2012

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Por Landt, Stephen G., Marinov, Georgi K., Kundaje, Anshul, Kheradpour, Pouya, Pauli, Florencia, Batzoglou, Serafim, Bernstein, Bradley E., Bickel, Peter, Brown, James B., Cayting, Philip, Chen, Yiwen, DeSalvo, Gilberto, Epstein, Charles, Fisher-Aylor, Katherine I., Euskirchen, Ghia, Gerstein, Mark, Gertz, Jason, Hartemink, Alexander J., Hoffman, Michael M., Iyer, Vishwanath R., Jung, Youngsook L., Karmakar, Subhradip, Kellis, Manolis, Kharchenko, Peter V., Li, Qunhua, Liu, Tao, Liu, X. Shirley, Ma, Lijia, Milosavljevic, Aleksandar, Myers, Richard M., Park, Peter J., Pazin, Michael J., Perry, Marc D., Raha, Debasish, Reddy, Timothy E., Rozowsky, Joel, Shoresh, Noam, Sidow, Arend, Slattery, Matthew, Stamatoyannopoulos, John A., Tolstorukov, Michael Y., White, Kevin P., Xi, Simon, Farnham, Peggy J., Lieb, Jason D., Wold, Barbara J., Snyder, Michael
Publicado em 2012

Architecture of the human regulatory network derived from ENCODE data

Por Gerstein, Mark B., Kundaje, Anshul, Hariharan, Manoj, Landt, Stephen G., Yan, Koon-Kiu, Cheng, Chao, Mu, Xinmeng Jasmine, Khurana, Ekta, Rozowsky, Joel, Alexander, Roger, Min, Renqiang, Alves, Pedro, Abyzov, Alexej, Addleman, Nick, Bhardwaj, Nitin, Boyle, Alan P., Cayting, Philip, Charos, Alexandra, Chen, David Z., Cheng, Yong, Clarke, Declan, Eastman, Catharine, Euskirchen, Ghia, Frietze, Seth, Fu, Yao, Gertz, Jason, Grubert, Fabian, Harmanci, Arif, Jain, Preti, Kasowski, Maya, Lacroute, Phil, Leng, Jing (Jane), Lian, Jin, Monahan, Hannah, O'Geen, Henriette, Ouyang, Zhengqing, Partridge, E. Christopher, Patacsil, Dorrelyn, Pauli, Florencia, Raha, Debasish, Ramirez, Lucia, Reddy, Timothy E., Reed, Brian, Shi, Minyi, Slifer, Teri, Wang, Jing, Wu, Linfeng, Yang, Xinqiong, Yip, Kevin Y., Zilberman-Schapira, Gili, Batzoglou, Serafim, Sidow, Arend, Farnham, Peggy J., Myers, Richard M., Weissman, Sherman M., Snyder, Michael
Publicado em 2012