Reconstruction of genealogical relationships with applications to Phase III of HapMap

od Kyriazopoulou-Panagiotopoulou, Sofia, Kashef Haghighi, Dorna, Aerni, Sarah J., Sundquist, Andreas, Bercovici, Sivan, Batzoglou, Serafim
Wydane 2011

Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements

od Kundaje, Anshul, Kyriazopoulou-Panagiotopoulou, Sofia, Libbrecht, Max, Smith, Cheryl L., Raha, Debasish, Winters, Elliott E., Johnson, Steven M., Snyder, Michael, Batzoglou, Serafim, Sidow, Arend
Wydane 2012

Extensive Variation in Chromatin States Across Humans

od Kasowski, Maya, Kyriazopoulou-Panagiotopoulou, Sofia, Grubert, Fabian, Zaugg, Judith B., Kundaje, Anshul, Liu, Yuling, Boyle, Alan P., Zhang, Qiangfeng Cliff, Zakharia, Fouad, Spacek, Damek V., Li, Jingjing, Xie, Dan, Olarerin-George, Anthony, Steinmetz, Lars M., Hogenesch, John B., Kellis, Manolis, Batzoglou, Serafim, Snyder, Michael
Wydane 2013

Resolving the full spectrum of human genome variation using Linked-Reads

od Marks, Patrick, Garcia, Sarah, Barrio, Alvaro Martinez, Belhocine, Kamila, Bernate, Jorge, Bharadwaj, Rajiv, Bjornson, Keith, Catalanotti, Claudia, Delaney, Josh, Fehr, Adrian, Fiddes, Ian T., Galvin, Brendan, Heaton, Haynes, Herschleb, Jill, Hindson, Christopher, Holt, Esty, Jabara, Cassandra B., Jett, Susanna, Keivanfar, Nikka, Kyriazopoulou-Panagiotopoulou, Sofia, Lek, Monkol, Lin, Bill, Lowe, Adam, Mahamdallie, Shazia, Maheshwari, Shamoni, Makarewicz, Tony, Marshall, Jamie, Meschi, Francesca, O'Keefe, Christopher J., Ordonez, Heather, Patel, Pranav, Price, Andrew, Royall, Ariel, Ruark, Elise, Seal, Sheila, Schnall-Levin, Michael, Shah, Preyas, Stafford, David, Williams, Stephen, Wu, Indira, Xu, Andrew Wei, Rahman, Nazneen, MacArthur, Daniel, Church, Deanna M.
Wydane w Genome Res (2019)

Extensive sequencing of seven human genomes to characterize benchmark reference materials

od Zook, Justin M., Catoe, David, McDaniel, Jennifer, Vang, Lindsay, Spies, Noah, Sidow, Arend, Weng, Ziming, Liu, Yuling, Mason, Christopher E., Alexander, Noah, Henaff, Elizabeth, McIntyre, Alexa B.R., Chandramohan, Dhruva, Chen, Feng, Jaeger, Erich, Moshrefi, Ali, Pham, Khoa, Stedman, William, Liang, Tiffany, Saghbini, Michael, Dzakula, Zeljko, Hastie, Alex, Cao, Han, Deikus, Gintaras, Schadt, Eric, Sebra, Robert, Bashir, Ali, Truty, Rebecca M., Chang, Christopher C., Gulbahce, Natali, Zhao, Keyan, Ghosh, Srinka, Hyland, Fiona, Fu, Yutao, Chaisson, Mark, Xiao, Chunlin, Trow, Jonathan, Sherry, Stephen T., Zaranek, Alexander W., Ball, Madeleine, Bobe, Jason, Estep, Preston, Church, George M., Marks, Patrick, Kyriazopoulou-Panagiotopoulou, Sofia, Zheng, Grace X.Y., Schnall-Levin, Michael, Ordonez, Heather S., Mudivarti, Patrice A., Giorda, Kristina, Sheng, Ying, Rypdal, Karoline Bjarnesdatter, Salit, Marc
Wydane w Sci Data (2016)

Haplotyping germline and cancer genomes using high-throughput linked-read sequencing

od Zheng, Grace X.Y., Lau, Billy T., Schnall-Levin, Michael, Jarosz, Mirna, Bell, John M., Hindson, Christopher M., Kyriazopoulou-Panagiotopoulou, Sofia, Masquelier, Donald A., Merrill, Landon, Terry, Jessica M., Mudivarti, Patrice A., Wyatt, Paul W., Bharadwaj, Rajiv, Makarewicz, Anthony J., Li, Yuan, Belgrader, Phillip, Price, Andrew D., Lowe, Adam J., Marks, Patrick, Vurens, Gerard M., Hardenbol, Paul, Montesclaros, Luz, Luo, Melissa, Greenfield, Lawrence, Wong, Alexander, Birch, David E., Short, Steven W., Bjornson, Keith P., Patel, Pranav, Hopmans, Erik S., Wood, Christina, Kaur, Sukhvinder, Lockwood, Glenn K., Stafford, David, Delaney, Joshua P., Wu, Indira, Ordonez, Heather S., Grimes, Susan M., Greer, Stephanie, Lee, Josephine Y., Belhocine, Kamila, Giorda, Kristina M., Heaton, William H., McDermott, Geoffrey P., Bent, Zachary W., Meschi, Francesca, Kondov, Nikola O., Wilson, Ryan, Bernate, Jorge A., Gauby, Shawn, Kindwall, Alex, Bermejo, Clara, Fehr, Adrian N., Chan, Adrian, Saxonov, Serge, Ness, Kevin D., Hindson, Benjamin J., Ji, Hanlee P.
Wydane w Nat Biotechnol (2016)

Multi-platform discovery of haplotype-resolved structural variation in human genomes

od Chaisson, Mark J. P., Sanders, Ashley D., Zhao, Xuefang, Malhotra, Ankit, Porubsky, David, Rausch, Tobias, Gardner, Eugene J., Rodriguez, Oscar L., Guo, Li, Collins, Ryan L., Fan, Xian, Wen, Jia, Handsaker, Robert E., Fairley, Susan, Kronenberg, Zev N., Kong, Xiangmeng, Hormozdiari, Fereydoun, Lee, Dillon, Wenger, Aaron M., Hastie, Alex R., Antaki, Danny, Anantharaman, Thomas, Audano, Peter A., Brand, Harrison, Cantsilieris, Stuart, Cao, Han, Cerveira, Eliza, Chen, Chong, Chen, Xintong, Chin, Chen-Shan, Chong, Zechen, Chuang, Nelson T., Lambert, Christine C., Church, Deanna M., Clarke, Laura, Farrell, Andrew, Flores, Joey, Galeev, Timur, Gorkin, David U., Gujral, Madhusudan, Guryev, Victor, Heaton, William Haynes, Korlach, Jonas, Kumar, Sushant, Kwon, Jee Young, Lam, Ernest T., Lee, Jong Eun, Lee, Joyce, Lee, Wan-Ping, Lee, Sau Peng, Li, Shantao, Marks, Patrick, Viaud-Martinez, Karine, Meiers, Sascha, Munson, Katherine M., Navarro, Fabio C. P., Nelson, Bradley J., Nodzak, Conor, Noor, Amina, Kyriazopoulou-Panagiotopoulou, Sofia, Pang, Andy W. C., Qiu, Yunjiang, Rosanio, Gabriel, Ryan, Mallory, Stütz, Adrian, Spierings, Diana C. J., Ward, Alistair, Welch, AnneMarie E., Xiao, Ming, Xu, Wei, Zhang, Chengsheng, Zhu, Qihui, Zheng-Bradley, Xiangqun, Lowy, Ernesto, Yakneen, Sergei, McCarroll, Steven, Jun, Goo, Ding, Li, Koh, Chong Lek, Ren, Bing, Flicek, Paul, Chen, Ken, Gerstein, Mark B., Kwok, Pui-Yan, Lansdorp, Peter M., Marth, Gabor T., Sebat, Jonathan, Shi, Xinghua, Bashir, Ali, Ye, Kai, Devine, Scott E., Talkowski, Michael E., Mills, Ryan E., Marschall, Tobias, Korbel, Jan O., Eichler, Evan E., Lee, Charles
Wydane w Nat Commun (2019)