Structure-aided prediction of mammalian transcription factor complexes in conserved non-coding elements

av Guturu, Harendra, Doxey, Andrew C., Wenger, Aaron M., Bejerano, Gill
Publicerad 2013

Independent erosion of conserved transcription factor binding sites points to shared hindlimb, vision and external testes loss in different mammals

av Berger, Mark J, Wenger, Aaron M, Guturu, Harendra, Bejerano, Gill
I publikationen Nucleic Acids Res (2018)

Variant Review with the Integrative Genomics Viewer (IGV)

av Robinson, James T., Thorvaldsdóttir, Helga, Wenger, Aaron M., Zehir, Ahmet, Mesirov, Jill P.
I publikationen Cancer Res (2017)

Automated Discovery of Tissue-Targeting Enhancers and Transcription Factors from Binding Motif and Gene Function Data

av Tuteja, Geetu, Moreira, Karen Betancourt, Chung, Tisha, Chen, Jenny, Wenger, Aaron M., Bejerano, Gill
Publicerad 2014

Human Developmental Enhancers Conserved between Deuterostomes and Protostomes

av Clarke, Shoa L., VanderMeer, Julia E., Wenger, Aaron M., Schaar, Bruce T., Ahituv, Nadav, Bejerano, Gill
Publicerad 2012

Computational methods to detect conserved non-genic elements in phylogenetically isolated genomes: application to zebrafish

av Hiller, Michael, Agarwal, Saatvik, Notwell, James H., Parikh, Ravi, Guturu, Harendra, Wenger, Aaron M., Bejerano, Gill
Publicerad 2013

PRISM offers a comprehensive genomic approach to transcription factor function prediction

av Wenger, Aaron M., Clarke, Shoa L., Guturu, Harendra, Chen, Jenny, Schaar, Bruce T., McLean, Cory Y., Bejerano, Gill
Publicerad 2013

The Enhancer Landscape during Early Neocortical Development Reveals Patterns of Dense Regulation and Co-option

av Wenger, Aaron M., Clarke, Shoa L., Notwell, James H., Chung, Tisha, Tuteja, Geetu, Guturu, Harendra, Schaar, Bruce T., Bejerano, Gill
Publicerad 2013

An MTF1 binding site disrupted by a homozygous variant in the promoter of ATP7B likely causes Wilson Disease

av Chen, Heidi I., Jagadeesh, Karthik A., Birgmeier, Johannes, Wenger, Aaron M., Guturu, Harendra, Schelley, Susan, Bernstein, Jonathan A., Bejerano, Gill
I publikationen Eur J Hum Genet (2018)

GREAT improves functional interpretation of cis-regulatory regions

av McLean, Cory Y, Bristor, Dave, Hiller, Michael, Clarke, Shoa L, Schaar, Bruce T, Lowe, Craig B, Wenger, Aaron M, Bejerano, Gill
I publikationen Nat Biotechnol (2010)

A Novel 13 Base Pair Insertion in the Sonic Hedgehog ZRS Limb Enhancer (LMBR1) Causes Preaxial Polydactyly with Triphalangeal Thumb

av Laurell, Tobias, VanderMeer, Julia E, Wenger, Aaron M., Grigelioniene, Giedre, Nordenskjöld, Agneta, Arner, Marianne, Ekblom, Anna Gerber, Bejerano, Gill, Ahituv, Nadav, Nordgren, Ann
Publicerad 2012

Microbiota modulate transcription in the intestinal epithelium without remodeling the accessible chromatin landscape

av Camp, J. Gray, Frank, Christopher L., Lickwar, Colin R., Guturu, Harendra, Rube, Tomas, Wenger, Aaron M., Chen, Jenny, Bejerano, Gill, Crawford, Gregory E., Rawls, John F.
Publicerad 2014

High-coverage, long-read sequencing of Han Chinese trio reference samples

av Wang, Ying-Chih, Olson, Nathan D., Deikus, Gintaras, Shah, Hardik, Wenger, Aaron M., Trow, Jonathan, Xiao, Chunlin, Sherry, Stephen, Salit, Marc L., Zook, Justin M., Smith, Melissa, Sebra, Robert
I publikationen Sci Data (2019)

Control of Pelvic Girdle Development by Genes of the Pbx Family and Emx2

av Capellini, Terence D., Handschuh, Karen, Quintana, Laura, Ferretti, Elisabetta, Di Giacomo, Giuseppina, Fantini, Sebastian, Vaccari, Giulia, Clarke, Shoa L., Wenger, Aaron M., Bejerano, Gill, Sharpe, James, Zappavigna, Vincenzo, Selleri, Licia
Publicerad 2011

Long-read trio sequencing of individuals with unsolved intellectual disability

av Pauper, Marc, Kucuk, Erdi, Wenger, Aaron M., Chakraborty, Shreyasee, Baybayan, Primo, Kwint, Michael, van der Sanden, Bart, Nelen, Marcel R., Derks, Ronny, Brunner, Han G., Hoischen, Alexander, Vissers, Lisenka E. L. M., Gilissen, Christian
I publikationen Eur J Hum Genet (2020)

Correction: Long-read trio sequencing of individuals with unsolved intellectual disability

av Pauper, Marc, Kucuk, Erdi, Wenger, Aaron M., Chakraborty, Shreyasee, Baybayan, Primo, Kwint, Michael, van der Sanden, Bart, Nelen, Marcel R., Derks, Ronny, Brunner, Han G., Hoischen, Alexander, Vissers, Lisenka E. L. M., Gilissen, Christian
I publikationen Eur J Hum Genet (2021)

Human-specific loss of regulatory DNA and the evolution of human-specific traits

av McLean, Cory Y., Reno, Philip L., Pollen, Alex A., Bassan, Abraham I., Capellini, Terence D., Guenther, Catherine, Indjeian, Vahan B., Lim, Xinhong, Menke, Douglas B., Schaar, Bruce T., Wenger, Aaron M., Bejerano, Gill, Kingsley, David M.
Publicerad 2011

Coding exons function as tissue-specific enhancers of nearby genes

av Birnbaum, Ramon Y., Clowney, E. Josephine, Agamy, Orly, Kim, Mee J., Zhao, Jingjing, Yamanaka, Takayuki, Pappalardo, Zachary, Clarke, Shoa L., Wenger, Aaron M., Nguyen, Loan, Gurrieri, Fiorella, Everman, David B., Schwartz, Charles E., Birk, Ohad S., Bejerano, Gill, Lomvardas, Stavros, Ahituv, Nadav
Publicerad 2012

Long-read genome sequencing identifies causal structural variation in a Mendelian disease Running title: Long-read WGS identifies causal SV in a Mendelian disease

av Merker, Jason D., Wenger, Aaron M., Sneddon, Tam, Grove, Megan, Zappala, Zach, Fresard, Laure, Waggott, Daryl, Utiramerur, Sowmi, Hou, Yanli, Smith, Kevin S., Montgomery, Stephen B., Wheeler, Matthew, Buchan, Jillian G., Lambert, Christine C., Eng, Kevin S., Hickey, Luke, Korlach, Jonas, Ford, James, Ashley, Euan A.
I publikationen Genet Med (2017)

Improved assembly and variant detection of a haploid human genome using single-molecule, high-fidelity long reads

av VOLLGER, MITCHELL R., LOGSDON, GLENNIS A., AUDANO, PETER A., SULOVARI, ARVIS, PORUBSKY, DAVID, PELUSO, PAUL, WENGER, AARON M., CONCEPCION, GREGORY T., KRONENBERG, ZEV N., MUNSON, KATHERINE M., BAKER, CARL, SANDERS, ASHLEY D., SPIERINGS, DIANA C.J., LANSDORP, PETER M., SURTI, URVASHI, HUNKAPILLER, MICHAEL W., EICHLER, EVAN E.
I publikationen Ann Hum Genet (2019)