Greater than 10 kb Read Lengths Routine when Sequencing with Pacific Biosciences' XL Release

par Heiner, Cheryl, Wang, Susana, Ashby, Meredith, Guo, Yan, Underwood, Jason, Baybayan, Primo
Publié 2013

A Low DNA Input Protocol for High-Quality PacBio De Novo Genome Assemblies

par Duncan, Turner, Kingan, Sarah B., Lambert, Christine C., Baybayan, Primo, Korlach, Jonas
Publié dans J Biomol Tech (2019)

Complete telomere-to-telomere de novo assembly of the Plasmodium falciparum genome through long-read (>11 kb), single molecule, real-time sequencing

par Vembar, Shruthi Sridhar, Seetin, Matthew, Lambert, Christine, Nattestad, Maria, Schatz, Michael C., Baybayan, Primo, Scherf, Artur, Smith, Melissa Laird
Publié dans DNA Res (2016)

Complete Genome Sequence of the Hypervirulent Bacterium Clostridium difficile Strain G46, Ribotype 027

par Gaulton, Tom, Misra, Raju, Rose, Graham, Baybayan, Primo, Hall, Richard, Freeman, Jane, Turton, Jane, Picton, Steve, Korlach, Jonas, Gharbia, Saheer, Shah, Haroun
Publié dans Genome Announc (2015)

Comparative Genome Analysis of an Extensively Drug-Resistant Isolate of Avian Sequence Type 167 Escherichia coli Strain Sanji with Novel In Silico Serotype O89b:H9

par Zeng, Xiancheng, Chi, Xuelin, Ho, Brian T., Moon, Damee, Lambert, Christine, Hall, Richard J., Baybayan, Primo, Wang, Shihua, Wilson, Brenda A., Ho, Mengfei
Publié dans mSystems (2019)

Single-Molecule Real-Time (SMRT) Full-Length RNA-Sequencing Reveals Novel and Distinct mRNA Isoforms in Human Bone Marrow Cell Subpopulations

par Deslattes Mays, Anne, Schmidt, Marcel, Graham, Garrett, Tseng, Elizabeth, Baybayan, Primo, Sebra, Robert, Sanda, Miloslav, Mazarati, Jean-Baptiste, Riegel, Anna, Wellstein, Anton
Publié dans Genes (Basel) (2019)

A High-Quality De novo Genome Assembly from a Single Mosquito Using PacBio Sequencing

par Kingan, Sarah B., Heaton, Haynes, Cudini, Juliana, Lambert, Christine C., Baybayan, Primo, Galvin, Brendan D., Durbin, Richard, Korlach, Jonas, Lawniczak, Mara K. N.
Publié dans Genes (Basel) (2019)

Variant phasing and haplotypic expression from long-read sequencing in maize

par Wang, Bo, Tseng, Elizabeth, Baybayan, Primo, Eng, Kevin, Regulski, Michael, Jiao, Yinping, Wang, Liya, Olson, Andrew, Chougule, Kapeel, Buren, Peter Van, Ware, Doreen
Publié dans Commun Biol (2020)

A high-quality genome assembly from a single, field-collected spotted lanternfly (Lycorma delicatula) using the PacBio Sequel II system

par Kingan, Sarah B, Urban, Julie, Lambert, Christine C, Baybayan, Primo, Childers, Anna K, Coates, Brad, Scheffler, Brian, Hackett, Kevin, Korlach, Jonas, Geib, Scott M
Publié dans Gigascience (2019)

A High-Quality, Long-Read De Novo Genome Assembly to Aid Conservation of Hawaiiʻs Last Remaining Crow Species

par Sutton, Jolene T., Helmkampf, Martin, Steiner, Cynthia C., Bellinger, M. Renee, Korlach, Jonas, Hall, Richard, Baybayan, Primo, Muehling, Jill, Gu, Jenny, Kingan, Sarah, Masuda, Bryce M., Ryder, Oliver A.
Publié dans Genes (Basel) (2018)

Long-read trio sequencing of individuals with unsolved intellectual disability

par Pauper, Marc, Kucuk, Erdi, Wenger, Aaron M., Chakraborty, Shreyasee, Baybayan, Primo, Kwint, Michael, van der Sanden, Bart, Nelen, Marcel R., Derks, Ronny, Brunner, Han G., Hoischen, Alexander, Vissers, Lisenka E. L. M., Gilissen, Christian
Publié dans Eur J Hum Genet (2020)

Correction: Long-read trio sequencing of individuals with unsolved intellectual disability

par Pauper, Marc, Kucuk, Erdi, Wenger, Aaron M., Chakraborty, Shreyasee, Baybayan, Primo, Kwint, Michael, van der Sanden, Bart, Nelen, Marcel R., Derks, Ronny, Brunner, Han G., Hoischen, Alexander, Vissers, Lisenka E. L. M., Gilissen, Christian
Publié dans Eur J Hum Genet (2021)

Multiple Genome Sequences of Helicobacter pylori Strains of Diverse Disease and Antibiotic Resistance Backgrounds from Malaysia

par Rehvathy, Vellaya, Tan, Mun Hua, Gunaletchumy, Selva Perumal, Teh, Xinsheng, Wang, Susana, Baybayan, Primo, Singh, Siddarth, Ashby, Meredith, Kaakoush, Nadeem O., Mitchell, Hazel M., Croft, Laurence J., Goh, Khean Lee, Loke, Mun Fai, Vadivelu, Jamuna
Publié 2013

Reference Grade Characterization of Polymorphisms in Full-Length HLA Class I and II Genes With Short-Read Sequencing on the ION PGM System and Long-Reads Generated by Single Molecu...

par Suzuki, Shingo, Ranade, Swati, Osaki, Ken, Ito, Sayaka, Shigenari, Atsuko, Ohnuki, Yuko, Oka, Akira, Masuya, Anri, Harting, John, Baybayan, Primo, Kitazume, Miwako, Sunaga, Junichi, Morishima, Satoko, Morishima, Yasuo, Inoko, Hidetoshi, Kulski, Jerzy K., Shiina, Takashi
Publié dans Front Immunol (2018)

The complete methylome of Helicobacter pylori UM032

par Lee, Woon Ching, Anton, Brian P, Wang, Susana, Baybayan, Primo, Singh, Siddarth, Ashby, Meredith, Chua, Eng Guan, Tay, Chin Yen, Thirriot, Fanny, Loke, Mun Fai, Goh, Khean Lee, Marshall, Barry J, Roberts, Richard J, Vadivelu, Jamuna
Publié dans BMC Genomics (2015)

Structural variation and its potential impact on genome instability: Novel discoveries in the EGFR landscape by long-read sequencing

par Cook, George W., Benton, Michael G., Akerley, Wallace, Mayhew, George F., Moehlenkamp, Cynthia, Raterman, Denise, Burgess, Daniel L., Rowell, William J., Lambert, Christine, Eng, Kevin, Gu, Jenny, Baybayan, Primo, Fussell, John T., Herbold, Heath D., O’Shea, John M., Varghese, Thomas K., Emerson, Lyska L.
Publié dans PLoS One (2020)

Comparing the genomes of Helicobacter pylori clinical strain UM032 and Mice-adapted derivatives

par Khosravi, Yalda, Rehvathy, Vellaya, Wee, Wei Yee, Wang, Susana, Baybayan, Primo, Singh, Siddarth, Ashby, Meredith, Ong, Junxian, Amoyo, Arlaine Anne, Seow, Shih Wee, Choo, Siew Woh, Perkins, Tim, Chua, Eng Guan, Tay, Alfred, Marshall, Barry James, Loke, Mun Fai, Goh, Khean Lee, Pettersson, Sven, Vadivelu, Jamuna
Publié 2013

Correction: Comparing the genomes of Helicobacter pylori clinical strain UM032 and mice-adapted derivatives

par Khosravi, Yalda, Rehvathy, Vellaya, Wee, Wei Yee, Wang, Susana, Baybayan, Primo, Singh, Siddarth, Ashby, Meredith, Ong, Junxian, Amoyo, Arlaine Anne, Seow, Shih Wee, Choo, Siew Woh, Perkins, Tim, Chua, Eng Guan, Tay, Alfred, Marshall, Barry James, Loke, Mun Fai, Goh, Khean Lee, Pettersson, Sven, Vadivelu, Jamuna
Publié 2014

Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles

par Nandi, Tannistha, Holden, Matthew T.G., Didelot, Xavier, Mehershahi, Kurosh, Boddey, Justin A., Beacham, Ifor, Peak, Ian, Harting, John, Baybayan, Primo, Guo, Yan, Wang, Susana, How, Lee Chee, Sim, Bernice, Essex-Lopresti, Angela, Sarkar-Tyson, Mitali, Nelson, Michelle, Smither, Sophie, Ong, Catherine, Aw, Lay Tin, Hoon, Chua Hui, Michell, Stephen, Studholme, David J., Titball, Richard, Chen, Swaine L., Parkhill, Julian, Tan, Patrick
Publié dans Genome Res (2015)

Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles

par Nandi, Tannistha, Holden, Matthew T.G., Didelot, Xavier, Mehershahi, Kurosh, Boddey, Justin A., Beacham, Ifor, Peak, Ian, Harting, John, Baybayan, Primo, Guo, Yan, Wang, Susana, How, Lee Chee, Sim, Bernice, Essex-Lopresti, Angela, Sarkar-Tyson, Mitali, Nelson, Michelle, Smither, Sophie, Ong, Catherine, Aw, Lay Tin, Hoon, Chua Hui, Michell, Stephen, Studholme, David J., Titball, Richard, Chen, Swaine L., Parkhill, Julian, Tan, Patrick
Publié dans Genome Res (2015)