The Path to Digestion Is Paved with Repair

le Underwood, Jason
Foilsithe 2006

New Factors Controlling Parent-Specific Genetic Control

le Underwood, Jason
Foilsithe 2006

Uncertainty analysis for ac-dc difference measurements with the AC Josephson Voltage Standard

le Underwood, Jason M
Foilsithe in Metrologia (2018)

Full Length cDNA Sequencing on the PacBio® RS

le Tseng, Elizabeth, Underwood, Jason G., Tseng, Elizabeth
Foilsithe 2013

Long-Read Sequencing of Chicken Transcripts and Identification of New Transcript Isoforms

le Thomas, Sean, Underwood, Jason G., Tseng, Elizabeth, Holloway, Alisha K.
Foilsithe 2014

Improving PacBio Long Read Accuracy by Short Read Alignment

le Au, Kin Fai, Underwood, Jason G., Lee, Lawrence, Wong, Wing Hung
Foilsithe 2012

Greater than 10 kb Read Lengths Routine when Sequencing with Pacific Biosciences' XL Release

le Heiner, Cheryl, Wang, Susana, Ashby, Meredith, Guo, Yan, Underwood, Jason, Baybayan, Primo
Foilsithe 2013

Homologues of the Caenorhabditis elegans Fox-1 Protein Are Neuronal Splicing Regulators in Mammals

le Underwood, Jason G., Boutz, Paul L., Dougherty, Joseph D., Stoilov, Peter, Black, Douglas L.
Foilsithe 2005

Gene Isoform Specificity through Enhancer-Associated Antisense Transcription

le Onodera, Courtney S., Underwood, Jason G., Katzman, Sol, Jacobs, Frank, Greenberg, David, Salama, Sofie R., Haussler, David
Foilsithe 2012

Molecular basis of RNA recognition by the human alternative splicing factor Fox-1

le Auweter, Sigrid D, Fasan, Rudi, Reymond, Luc, Underwood, Jason G, Black, Douglas L, Pitsch, Stefan, Allain, Frédéric H-T
Foilsithe 2006

FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing

le Underwood, Jason G., Uzilov, Andrew V., Katzman, Sol, Onodera, Courtney S., Mainzer, Jacob E., Mathews, David H., Lowe, Todd M., Salama, Sofie R., Haussler, David
Foilsithe 2010

Transcriptional fates of human-specific segmental duplications in brain

le Dougherty, Max L., Underwood, Jason G., Nelson, Bradley J., Tseng, Elizabeth, Munson, Katherine M., Penn, Osnat, Nowakowski, Tomasz J., Pollen, Alex A., Eichler, Evan E.
Foilsithe in Genome Res (2018)

Characterization of fusion genes and the significantly expressed fusion isoforms in breast cancer by hybrid sequencing

le Weirather, Jason L., Afshar, Pegah Tootoonchi, Clark, Tyson A., Tseng, Elizabeth, Powers, Linda S., Underwood, Jason G., Zabner, Joseph, Korlach, Jonas, Wong, Wing Hung, Au, Kin Fai
Foilsithe in Nucleic Acids Res (2015)

Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing

le Gordon, Sean P., Tseng, Elizabeth, Salamov, Asaf, Zhang, Jiwei, Meng, Xiandong, Zhao, Zhiying, Kang, Dongwan, Underwood, Jason, Grigoriev, Igor V., Figueroa, Melania, Schilling, Jonathan S., Chen, Feng, Wang, Zhong
Foilsithe in PLoS One (2015)

Massively multiplex single-molecule oligonucleosome footprinting

le Abdulhay, Nour J, McNally, Colin P, Hsieh, Laura J, Kasinathan, Sivakanthan, Keith, Aidan, Estes, Laurel S, Karimzadeh, Mehran, Underwood, Jason G, Goodarzi, Hani, Narlikar, Geeta J, Ramani, Vijay
Foilsithe in eLife (2020)

Comparative Annotation Toolkit (CAT)—simultaneous clade and personal genome annotation

le Fiddes, Ian T., Armstrong, Joel, Diekhans, Mark, Nachtweide, Stefanie, Kronenberg, Zev N., Underwood, Jason G., Gordon, David, Earl, Dent, Keane, Thomas, Eichler, Evan E., Haussler, David, Stanke, Mario, Paten, Benedict
Foilsithe in Genome Res (2018)

Characterization of the human ESC transcriptome by hybrid sequencing

le Au, Kin Fai, Sebastiano, Vittorio, Afshar, Pegah Tootoonchi, Durruthy, Jens Durruthy, Lee, Lawrence, Williams, Brian A., van Bakel, Harm, Schadt, Eric E., Reijo-Pera, Renee A., Underwood, Jason G., Wong, Wing Hung
Foilsithe 2013

Robust single-cell discovery of RNA targets of RNA binding proteins and ribosomes

le Brannan, Kristopher W., Chaim, Isaac A., Marina, Ryan J., Yee, Brian A., Kofman, Eric R., Lorenz, Daniel A., Jagannatha, Pratibha, Dong, Kevin D., Madrigal, Assael A., Underwood, Jason G., Yeo, Gene W.
Foilsithe in Nat Methods (2021)

ORF Capture-Seq as a versatile method for targeted identification of full-length isoforms

le Sheynkman, Gloria M., Tuttle, Katharine S., Laval, Florent, Tseng, Elizabeth, Underwood, Jason G., Yu, Liang, Dong, Da, Smith, Melissa L., Sebra, Robert, Willems, Luc, Hao, Tong, Calderwood, Michael A., Hill, David E., Vidal, Marc
Foilsithe in Nat Commun (2020)

Fallacy of the Unique Genome: Sequence Diversity within Single Helicobacter pylori Strains

le Draper, Jenny L., Hansen, Lori M., Bernick, David L., Abedrabbo, Samar, Underwood, Jason G., Kong, Nguyet, Huang, Bihua C., Weis, Allison M., Weimer, Bart C., van Vliet, Arnoud H. M., Pourmand, Nader, Solnick, Jay V., Karplus, Kevin, Ottemann, Karen M.
Foilsithe in mBio (2017)