The Tyrosine Kinase Inhibitor Gefitinib Restricts Mycobacterium tuberculosis Growth through Increased Lysosomal Biogenesis and Modulation of Cytokine Signaling

by Sogi, Kimberly M., Lien, Katie A., Johnson, Jeffrey R., Krogan, Nevan J., Stanley, Sarah A.
Published in ACS Infect Dis (2017)

Dispersed sites of HIV Vif-dependent polyubiquitination in the DNA deaminase APOBEC3F

by Albin, John S., Anderson, John S., Johnson, Jeffrey R., Harjes, Elena, Matsuo, Hiroshi, Krogan, Nevan J., Harris, Reuben S.
Published 2013

Two Accessory Proteins Govern MmpL3 Mycolic Acid Transport in Mycobacteria

by Fay, Allison, Czudnochowski, Nadine, Rock, Jeremy M., Johnson, Jeffrey R., Krogan, Nevan J., Rosenberg, Oren, Glickman, Michael S.
Published in mBio (2019)

IFI16 DNA Sensor Is Required for Death of Lymphoid CD4 T-cells Abortively Infected with HIV

by Monroe, Kathryn M., Yang, Zhiyuan, Johnson, Jeffrey R., Geng, Xin, Doitsh, Gilad, Krogan, Nevan J., Greene, Warner C.
Published 2013

Prb1 Protease Activity Is Required for Its Recognition by the F-Box Protein Saf1

by Mark, Kevin G., Meza-Gutierrez, Fernando, Johnson, Jeffrey R., Newton, Billy W., Krogan, Nevan J., Toczyski, David P.
Published in Biochemistry (2015)

AFF1 is a ubiquitous P-TEFb partner to enable Tat extraction of P-TEFb from 7SK snRNP and formation of SECs for HIV transactivation

by Lu, Huasong, Li, Zichong, Xue, Yuhua, Schulze-Gahmen, Ursula, Johnson, Jeffrey R., Krogan, Nevan J., Alber, Tom, Zhou, Qiang
Published 2014

Affinity purification–mass spectrometry and network analysis to understand protein-protein interactions

by Morris, John H, Knudsen, Giselle M, Verschueren, Erik, Johnson, Jeffrey R, Cimermancic, Peter, Greninger, Alexander L, Pico, Alexander R
Published in Nat Protoc (2014)

Non-degradative Ubiquitination of Protein Kinases

by Ball, K. Aurelia, Johnson, Jeffrey R., Lewinski, Mary K., Guatelli, John, Verschueren, Erik, Krogan, Nevan J., Jacobson, Matthew P.
Published in PLoS Comput Biol (2016)

Dust deposition on the decks of the Mars Exploration Rovers: 10 years of dust dynamics on the Panoramic Camera calibration targets

by Kinch, Kjartan M., Bell, James F., Goetz, Walter, Johnson, Jeffrey R., Joseph, Jonathan, Madsen, Morten Bo, Sohl‐Dickstein, Jascha
Published in Earth Space Sci (2015)

Prediction of Functionally Important Phospho-Regulatory Events in Xenopus laevis Oocytes

by Johnson, Jeffrey R., Santos, Silvia D., Johnson, Tasha, Pieper, Ursula, Strumillo, Marta, Wagih, Omar, Sali, Andrej, Krogan, Nevan J., Beltrao, Pedro
Published in PLoS Comput Biol (2015)

PJA2 ubiquitinates the HIV-1 Tat protein with atypical chain linkages to activate viral transcription

by Faust, Tyler B., Li, Yang, Jang, Gwendolyn M., Johnson, Jeffrey R., Yang, Shumin, Weiss, Amit, Krogan, Nevan J., Frankel, Alan D.
Published in Sci Rep (2017)

Regulation of Sufu activity by p66β and Mycbp provides new insight into vertebrate Hedgehog signaling

by Lin, Chuwen, Yao, Erica, Wang, Kevin, Nozawa, Yoko, Shimizu, Hirohito, Johnson, Jeffrey R., Chen, Jau-Nian, Krogan, Nevan J., Chuang, Pao-Tien
Published in Genes Dev (2014)

Chaperone-mediated reflux of secretory proteins to the cytosol during endoplasmic reticulum stress

by Igbaria, Aeid, Merksamer, Philip I., Trusina, Ala, Tilahun, Firehiwot, Johnson, Jeffrey R., Brandman, Onn, Krogan, Nevan J., Weissman, Jonathan S., Papa, Feroz R.
Published in Proc Natl Acad Sci U S A (2019)

Proteomic Analysis of Schistosoma mansoni Egg Secretions

by Cass, Cynthia L., Johnson, Jeffrey R., Califf, Lindsay L., Xu, Tao, Hernandez, Hector J., Stadecker, Miguel J., Yates, John R., Williams, David L.
Published 2007

Chlamydia interfere with an interaction between the mannose-6-phosphate receptor and sorting nexins to counteract host restriction

by Elwell, Cherilyn A, Czudnochowski, Nadine, von Dollen, John, Johnson, Jeffrey R, Nakagawa, Rachel, Mirrashidi, Kathleen, Krogan, Nevan J, Engel, Joanne N, Rosenberg, Oren S
Published in eLife (2017)

Neuronal Apolipoprotein E4 Expression Results in Proteome-Wide Alterations and Compromises Bioenergetic Capacity by Disrupting Mitochondrial Function

by Orr, Adam L., Kim, Chaeyoung, Jimenez-Morales, David, Newton, Billy W., Johnson, Jeffrey R., Krogan, Nevan J., Swaney, Danielle L., Mahley, Robert W.
Published in J Alzheimers Dis (2019)

Acetylome Profiling Reveals Overlap in the Regulation of Diverse Processes by Sirtuins, Gcn5, and Esa1

by Downey, Michael, Johnson, Jeffrey R., Davey, Norman E., Newton, Billy W., Johnson, Tasha L., Galaang, Shastyn, Seller, Charles A., Krogan, Nevan, Toczyski, David P.
Published in Mol Cell Proteomics (2015)

G Protein–Coupled Receptor Endocytosis Confers Uniformity in Responses to Chemically Distinct Ligands

by Tsvetanova, Nikoleta G., Trester-Zedlitz, Michelle, Newton, Billy W., Riordan, Daniel P., Sundaram, Aparna B., Johnson, Jeffrey R., Krogan, Nevan J., von Zastrow, Mark
Published in Mol Pharmacol (2017)

The Yeast DNA Damage Checkpoint Kinase Rad53 Targets the Exoribonuclease, Xrn1

by Lao, Jessica P., Ulrich, Katie M., Johnson, Jeffrey R., Newton, Billy W., Vashisht, Ajay A., Wohlschlegel, James A., Krogan, Nevan J., Toczyski, David P.
Published in G3 (Bethesda) (2018)

The association of spiritual care providers’ activities with family members’ satisfaction with care after a death in the ICU

by Johnson, Jeffrey R., Engelberg, Ruth A., Nielsen, Elizabeth L., Kross, Erin K., Smith, Nicholas L., Hanada, Julie C., O’Mahoney, Sean K Doll, Curtis, J. Randall
Published 2014