MODBASE, a database of annotated comparative protein structure models

di Pieper, Ursula, Eswar, Narayanan, Stuart, Ashley C., Ilyin, Valentin A., Sali, Andrej
Pubblicazione 2002

SALIGN: a web server for alignment of multiple protein sequences and structures

di Braberg, Hannes, Webb, Benjamin M., Tjioe, Elina, Pieper, Ursula, Sali, Andrej, Madhusudhan, M.S.
Pubblicazione 2012

Protein complex compositions predicted by structural similarity

di Davis, Fred P., Braberg, Hannes, Shen, Min-Yi, Pieper, Ursula, Sali, Andrej, Madhusudhan, M.S.
Pubblicazione 2006

ModBase, a database of annotated comparative protein structure models

di Sánchez, Roberto, Pieper, Ursula, Mirkovi, Neboja, de Bakker, Paul I. W., Wittenstein, Edward, ali, Andrej
Pubblicazione 2000

Prediction of protease substrates using sequence and structure features

di Barkan, David T., Hostetter, Daniel R., Mahrus, Sami, Pieper, Ursula, Wells, James A., Craik, Charles S., Sali, Andrej
Pubblicazione 2010

The AnnoLite and AnnoLyze programs for comparative annotation of protein structures

di Marti-Renom, Marc A, Rossi, Andrea, Al-Shahrour, Fátima, Davis, Fred P, Pieper, Ursula, Dopazo, Joaquín, Sali, Andrej
Pubblicazione 2007

A Novel Role for Matrix Metalloproteinases In Regulating Mammary Stem Cell Function via the Wnt Signaling Pathway

di Kessenbrock, Kai, Dijkgraaf, Gerrit J. P., Lawson, Devon A., Littlepage, Laurie E., Shahi, Payam, Pieper, Ursula, Werb, Zena
Pubblicazione 2013

Biochemical characterization and structural modeling of human cathepsin E variant 2 in comparison to the wild-type protein

di Puizdar, Vida, Zajc, Tajana, Žerovnik, Eva, Renko, Miha, Pieper, Ursula, Eswar, Narayanan, Šali, Andrej, Dolenc, Iztok, Turk, Vito
Pubblicazione 2012

Consequences of domain insertion on sequence-structure divergence in a superfold

di Pandya, Chetanya, Brown, Shoshana, Pieper, Ursula, Sali, Andrej, Dunaway-Mariano, Debra, Babbitt, Patricia C., Xia, Yu, Allen, Karen N.
Pubblicazione 2013

Comparative Protein Structure Modeling Using Modeller

di Eswar, Narayanan, Webb, Ben, Marti-Renom, Marc A., Madhusudhan, M.S., Eramian, David, Shen, Min-yi, Pieper, Ursula, Sali, Andrej
Pubblicazione 2006

High-Throughput Computational and Experimental Techniques in Structural Genomics

di Chance, Mark R., Fiser, Andras, Sali, Andrej, Pieper, Ursula, Eswar, Narayanan, Xu, Guiping, Fajardo, J. Eduardo, Radhakannan, Thirumuruhan, Marinkovic, Nebojsa
Pubblicazione 2004

Prediction of Functionally Important Phospho-Regulatory Events in Xenopus laevis Oocytes

di Johnson, Jeffrey R., Santos, Silvia D., Johnson, Tasha, Pieper, Ursula, Strumillo, Marta, Wagih, Omar, Sali, Andrej, Krogan, Nevan J., Beltrao, Pedro
Pubblicato in PLoS Comput Biol (2015)

DBAli tools: mining the protein structure space

di Marti-Renom, Marc A., Pieper, Ursula, Madhusudhan, M. S., Rossi, Andrea, Eswar, Narayanan, Davis, Fred P., Al-Shahrour, Fátima, Dopazo, Joaquín, Sali, Andrej
Pubblicazione 2007

Functional hot spots in human ATP-binding cassette transporter nucleotide binding domains

di Kelly, Libusha, Fukushima, Hisayo, Karchin, Rachel, Gow, Jason M, Chinn, Leslie W, Pieper, Ursula, Segal, Mark R, Kroetz, Deanna L, Sali, Andrej
Pubblicazione 2010

Response to “Predictable difficulty or difficulty to predict”

di Kelly, Libusha, Fukushima, Hisayo, Karchin, Rachel, Gow, Jason M, Chinn, Leslie W, Pieper, Ursula, Segal, Mark R, Kroetz, Deanna L, Sali, Andrej
Pubblicazione 2011

Atlas of the Radical SAM Superfamily: Divergent Evolution of Function Using a “Plug & Play” Domain

di Holliday, Gemma L., Akiva, Eyal, Meng, Elaine C., Brown, Shoshana D., Calhoun, Sara, Pieper, Ursula, Sali, Andrej, Booker, Squire J., Babbitt, Patricia C.
Pubblicato in Methods Enzymol (2018)

A survey of integral α-helical membrane proteins

di Kelly, Libusha, Pieper, Ursula, Eswar, Narayanan, Hays, Franklin A., Li, Min, Roe-Zurz, Zygy, Kroetz, Deanna L., Giacomini, Kathleen M., Stroud, Robert M., Sali, Andrej
Pubblicazione 2009

Tools for comparative protein structure modeling and analysis

di Eswar, Narayanan, John, Bino, Mirkovic, Nebojsa, Fiser, Andras, Ilyin, Valentin A., Pieper, Ursula, Stuart, Ashley C., Marti-Renom, Marc A., Madhusudhan, M. S., Yerkovich, Bozidar, Sali, Andrej
Pubblicazione 2003

Target Prediction for an Open Access Set of Compounds Active against Mycobacterium tuberculosis

di Martínez-Jiménez, Francisco, Papadatos, George, Yang, Lun, Wallace, Iain M., Kumar, Vinod, Pieper, Ursula, Sali, Andrej, Brown, James R., Overington, John P., Marti-Renom, Marc A.
Pubblicazione 2013

Structural genomics of enzymes involved in sterol/isoprenoid biosynthesis

di Bonanno, Jeffrey B., Edo, Carme, Eswar, Narayanan, Pieper, Ursula, Romanowski, Michael J., Ilyin, Valentin, Gerchman, Sue Ellen, Kycia, Helen, Studier, F. William, Sali, Andrej, Burley, Stephen K.
Pubblicazione 2001