Dynamic CRM occupancy reflects a temporal map of developmental progression

Por Wilczyński, Bartek, Furlong, Eileen E M
Publicado em 2010

Predicting Spatial and Temporal Gene Expression Using an Integrative Model of Transcription Factor Occupancy and Chromatin State

Por Wilczynski, Bartek, Liu, Ya-Hsin, Yeo, Zhen Xuan, Furlong, Eileen E. M.
Publicado em 2012

Coordinated repression and activation of two transcriptional programs stabilizes cell fate during myogenesis

Por Ciglar, Lucia, Girardot, Charles, Wilczyński, Bartek, Braun, Martina, Furlong, Eileen E. M.
Publicado em 2014

Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers

Por Girardot, Charles, Scholtalbers, Jelle, Sauer, Sajoscha, Su, Shu-Yi, Furlong, Eileen E.M.
Publicado no BMC Bioinformatics (2016)

A core transcriptional network for early mesoderm development in Drosophila melanogaster

Por Sandmann, Thomas, Girardot, Charles, Brehme, Marc, Tongprasit, Waraporn, Stolc, Viktor, Furlong, Eileen E.M.
Publicado em 2007

Subtle Changes in Motif Positioning Cause Tissue-Specific Effects on Robustness of an Enhancer's Activity

Por Erceg, Jelena, Saunders, Timothy E., Girardot, Charles, Devos, Damien P., Hufnagel, Lars, Furlong, Eileen E. M.
Publicado em 2014

FourCSeq: analysis of 4C sequencing data

Por Klein, Felix A., Pakozdi, Tibor, Anders, Simon, Ghavi-Helm, Yad, Furlong, Eileen E. M., Huber, Wolfgang
Publicado no Bioinformatics (2015)

Combinatorial Binding Leads to Diverse Regulatory Responses: Lmd Is a Tissue-Specific Modulator of Mef2 Activity

Por Cunha, Paulo M. F., Sandmann, Thomas, Gustafson, E. Hilary, Ciglar, Lucia, Eichenlaub, Michael P., Furlong, Eileen E. M.
Publicado em 2010

Temporal ChIP-on-chip reveals Biniou as a universal regulator of the visceral muscle transcriptional network

Por Jakobsen, Janus S., Braun, Martina, Astorga, Jeanette, Gustafson, E. Hilary, Sandmann, Thomas, Karzynski, Michal, Carlsson, Peter, Furlong, Eileen E.M.
Publicado em 2007

Model-based method for transcription factor target identification with limited data

Por Honkela, Antti, Girardot, Charles, Gustafson, E. Hilary, Liu, Ya-Hsin, Furlong, Eileen E. M., Lawrence, Neil D., Rattray, Magnus
Publicado em 2010

Dual functionality of cis-regulatory elements as developmental enhancers and Polycomb response elements

Por Erceg, Jelena, Pakozdi, Tibor, Marco-Ferreres, Raquel, Ghavi-Helm, Yad, Girardot, Charles, Bracken, Adrian P., Furlong, Eileen E.M.
Publicado no Genes Dev (2017)

Impact of genomic structural variation in Drosophila melanogaster based on population-scale sequencing

Por Zichner, Thomas, Garfield, David A., Rausch, Tobias, Stütz, Adrian M., Cannavó, Enrico, Braun, Martina, Furlong, Eileen E.M., Korbel, Jan O.
Publicado em 2013

Qualitative Dynamical Modelling Can Formally Explain Mesoderm Specification and Predict Novel Developmental Phenotypes

Por Mbodj, Abibatou, Gustafson, E. Hilary, Ciglar, Lucia, Junion, Guillaume, Gonzalez, Aitor, Girardot, Charles, Perrin, Laurent, Furlong, Eileen E. M., Thieffry, Denis
Publicado no PLoS Comput Biol (2016)

Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks

Por Cannavò, Enrico, Khoueiry, Pierre, Garfield, David A., Geeleher, Paul, Zichner, Thomas, Gustafson, E. Hilary, Ciglar, Lucia, Korbel, Jan O., Furlong, Eileen E.M.
Publicado no Curr Biol (2016)

Conservation of transcription factor binding specificities across 600 million years of bilateria evolution

Por Nitta, Kazuhiro R, Jolma, Arttu, Yin, Yimeng, Morgunova, Ekaterina, Kivioja, Teemu, Akhtar, Junaid, Hens, Korneel, Toivonen, Jarkko, Deplancke, Bart, Furlong, Eileen E M, Taipale, Jussi
Publicado no eLife (2015)

A conserved role for Snail as a potentiator of active transcription

Por Rembold, Martina, Ciglar, Lucia, Yáñez-Cuna, J. Omar, Zinzen, Robert P., Girardot, Charles, Jain, Ankit, Welte, Michael A., Stark, Alexander, Leptin, Maria, Furlong, Eileen E.M.
Publicado em 2014

Next-generation sequencing-based detection of germline L1-mediated transductions

Por Tica, Jelena, Lee, Eunjung, Untergasser, Andreas, Meiers, Sascha, Garfield, David A., Gokcumen, Omer, Furlong, Eileen E.M., Park, Peter J., Stütz, Adrian M., Korbel, Jan O.
Publicado no BMC Genomics (2016)

4DXpress: a database for cross-species expression pattern comparisons

Por Haudry, Yannick, Berube, Hugo, Letunic, Ivica, Weeber, Paul-Daniel, Gagneur, Julien, Girardot, Charles, Kapushesky, Misha, Arendt, Detlev, Bork, Peer, Brazma, Alvis, Furlong, Eileen E. M., Wittbrodt, Joachim, Henrich, Thorsten
Publicado em 2008