Horizontally transferred genes cluster spatially and metabolically

Por Dilthey, Alexander, Lercher, Martin J.
Publicado no Biol Direct (2015)

Ultraplexing: increasing the efficiency of long-read sequencing for hybrid assembly with k-mer-based multiplexing

Por Dilthey, Alexander T., Meyer, Sebastian A., Kaasch, Achim J.
Publicado no Genome Biol (2020)

HLA*IMP—an integrated framework for imputing classical HLA alleles from SNP genotypes

Por Dilthey, Alexander T., Moutsianas, Loukas, Leslie, Stephen, McVean, Gil
Publicado em 2011

Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps

Por Dilthey, Alexander T., Jain, Chirag, Koren, Sergey, Phillippy, Adam M.
Publicado no Nat Commun (2019)

A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases

Por Jain, Chirag, Dilthey, Alexander, Koren, Sergey, Aluru, Srinivas, Phillippy, Adam M.
Publicado no J Comput Biol (2018)

A fast adaptive algorithm for computing whole-genome homology maps

Por Jain, Chirag, Koren, Sergey, Dilthey, Alexander, Phillippy, Adam M, Aluru, Srinivas
Publicado no Bioinformatics (2018)

Improved genome inference in the MHC using a population reference graph

Por Dilthey, Alexander, Cox, Charles, Iqbal, Zamin, Nelson, Matthew R., McVean, Gil
Publicado no Nat Genet (2015)

High-Accuracy HLA Type Inference from Whole-Genome Sequencing Data Using Population Reference Graphs

Por Dilthey, Alexander T., Gourraud, Pierre-Antoine, Mentzer, Alexander J., Cereb, Nezih, Iqbal, Zamin, McVean, Gil
Publicado no PLoS Comput Biol (2016)

Multi-Population Classical HLA Type Imputation

Por Dilthey, Alexander, Leslie, Stephen, Moutsianas, Loukas, Shen, Judong, Cox, Charles, Nelson, Matthew R., McVean, Gil
Publicado em 2013

NovoGraph: Human genome graph construction from multiple long-read de novo assemblies

Por Biederstedt, Evan, Oliver, Jeffrey C., Hansen, Nancy F., Jajoo, Aarti, Dunn, Nathan, Olson, Andrew, Busby, Ben, Dilthey, Alexander T.
Publicado no F1000Res (2018)

Bayesian analysis of genetic association across tree-structured routine healthcare data in the UK Biobank

Por Cortes, Adrian, Dendrou, Calliope A., Motyer, Allan, Jostins, Luke, Vukcevic, Damjan, Dilthey, Alexander, Donnelly, Peter, Leslie, Stephen, Fugger, Lars, McVean, Gil
Publicado no Nat Genet (2017)

Characterisation of the changing genomic landscape of metastatic melanoma using cell free DNA

Por Cutts, Anthony, Venn, Oliver, Dilthey, Alexander, Gupta, Avinash, Vavoulis, Dimitris, Dreau, Helene, Middleton, Mark, McVean, Gil, Taylor, Jenny C., Schuh, Anna
Publicado no NPJ Genom Med (2017)

GENETICS OF GENE EXPRESSION IN PRIMARY IMMUNE CELLS IDENTIFIES CELL-SPECIFIC MASTER REGULATORS AND ROLES OF HLA ALLELES

Por Fairfax, Benjamin P, Makino, Seiko, Radhakrishnan, Jayachandran, Plant, Katharine, Leslie, Stephen, Dilthey, Alexander, Ellis, Peter, Langford, Cordelia, Vannberg, Fredrik O, Knight, Julian C
Publicado em 2012

HLA*LA—HLA typing from linearly projected graph alignments

Por Dilthey, Alexander T, Mentzer, Alexander J, Carapito, Raphael, Cutland, Clare, Cereb, Nezih, Madhi, Shabir A, Rhie, Arang, Koren, Sergey, Bahram, Seiamak, McVean, Gil, Phillippy, Adam M
Publicado no Bioinformatics (2019)

De novo assembly of haplotype-resolved genomes with trio binning

Por Koren, Sergey, Rhie, Arang, Walenz, Brian P., Dilthey, Alexander T., Bickhart, Derek M., Kingan, Sarah B., Hiendleder, Stefan, Williams, John L., Smith, Timothy P. L., Phillippy, Adam M.
Publicado no Nat Biotechnol (2018)

Imputation of KIR Types from SNP Variation Data

Por Vukcevic, Damjan, Traherne, James A., Næss, Sigrid, Ellinghaus, Eva, Kamatani, Yoichiro, Dilthey, Alexander, Lathrop, Mark, Karlsen, Tom H., Franke, Andre, Moffatt, Miriam, Cookson, William, Trowsdale, John, McVean, Gil, Sawcer, Stephen, Leslie, Stephen
Publicado no Am J Hum Genet (2015)

Genetic structure of SARS-CoV-2 reflects clonal superspreading and multiple independent introduction events, North-Rhine Westphalia, Germany, February and March 2020

Por Walker, Andreas, Houwaart, Torsten, Wienemann, Tobias, Vasconcelos, Malte Kohns, Strelow, Daniel, Senff, Tina, Hülse, Lisanna, Adams, Ortwin, Andree, Marcel, Hauka, Sandra, Feldt, Torsten, Jensen, Björn-Erik, Keitel, Verena, Kindgen-Milles, Detlef, Timm, Jörg, Pfeffer, Klaus, Dilthey, Alexander T
Publicado no Euro Surveill (2020)

Variation in human chromosome 21 ribosomal RNA genes characterized by TAR cloning and long-read sequencing

Por Kim, Jung-Hyun, Dilthey, Alexander T, Nagaraja, Ramaiah, Lee, Hee-Sheung, Koren, Sergey, Dudekula, Dawood, Wood III, William H, Piao, Yulan, Ogurtsov, Aleksey Y, Utani, Koichi, Noskov, Vladimir N, Shabalina, Svetlana A, Schlessinger, David, Phillippy, Adam M, Larionov, Vladimir
Publicado no Nucleic Acids Res (2018)

Psoriasis Patients Are Enriched for Genetic Variants That Protect against HIV-1 Disease

Por Chen, Haoyan, Hayashi, Genki, Lai, Olivia Y., Dilthey, Alexander, Kuebler, Peter J., Wong, Tami V., Martin, Maureen P., Fernandez Vina, Marcelo A., McVean, Gil, Wabl, Matthias, Leslie, Kieron S., Maurer, Toby, Martin, Jeffrey N., Deeks, Steven G., Carrington, Mary, Bowcock, Anne M., Nixon, Douglas F., Liao, Wilson
Publicado em 2012

Distinct genetic architectures and environmental factors associate with host response to the γ2-herpesvirus infections

Por Sallah, Neneh, Miley, Wendell, Labo, Nazzarena, Carstensen, Tommy, Fatumo, Segun, Gurdasani, Deepti, Pollard, Martin O., Dilthey, Alexander T., Mentzer, Alexander J., Marshall, Vickie, Cornejo Castro, Elena M., Pomilla, Cristina, Young, Elizabeth H., Asiki, Gershim, Hibberd, Martin L., Sandhu, Manjinder, Kellam, Paul, Newton, Robert, Whitby, Denise, Barroso, Inês
Publicado no Nat Commun (2020)