In search of perfect reads

Tekijä Pal, Soumitra, Aluru, Srinivas
Julkaisussa BMC Bioinformatics (2015)

Guest Editors’ Introduction, Special Issue on High-Performance Computational Biology

Tekijä Bader, David A., Aluru, Srinivas
Julkaistu 2008

Contemporary computing 4th International Conference, IC3 2011, Noida, India, August 8-10, 2011 : proceedings /

Tekijä International Conference on Contemporary Computing, Aluru, Srinivas.
Julkaistu 2011

Repeat-aware modeling and correction of short read errors

Tekijä Yang, Xiao, Aluru, Srinivas, Dorman, Karin S
Julkaistu 2011

Microarray Data Processing Techniques for Genome-Scale Network Inference from Large Public Repositories

Tekijä Chockalingam, Sriram, Aluru, Maneesha, Aluru, Srinivas
Julkaisussa Microarrays (Basel) (2016)

A comprehensive evaluation of long read error correction methods

Tekijä Zhang, Haowen, Jain, Chirag, Aluru, Srinivas
Julkaisussa BMC Genomics (2020)

High performance computing - HiPC 2007 14th International Conference, Goa, India, December 18-21, 2007 : proceedings /

Tekijä International Conference on High Performance Computing, Aluru, Srinivas.
Julkaistu 2007

Parallel short sequence assembly of transcriptomes

Tekijä Jackson, Benjamin G, Schnable, Patrick S, Aluru, Srinivas
Julkaistu 2009

Efficient clustering of large EST data sets on parallel computers

Tekijä Kalyanaraman, Anantharaman, Aluru, Srinivas, Kothari, Suresh, Brendel, Volker
Julkaistu 2003

Reverse engineering and analysis of large genome-scale gene networks

Tekijä Aluru, Maneesha, Zola, Jaroslaw, Nettleton, Dan, Aluru, Srinivas
Julkaistu 2013

SNVSniffer: an integrated caller for germline and somatic single-nucleotide and indel mutations

Tekijä Liu, Yongchao, Loewer, Martin, Aluru, Srinivas, Schmidt, Bertil
Julkaisussa BMC Syst Biol (2016)

Fast and Accurate Construction of Ultra-Dense Consensus Genetic Maps Using Evolution Strategy Optimization

Tekijä Mester, David, Ronin, Yefim, Schnable, Patrick, Aluru, Srinivas, Korol, Abraham
Julkaisussa PLoS One (2015)

An SVM-based method for assessment of transcription factor-DNA complex models

Tekijä Corona, Rosario I., Sudarshan, Sanjana, Aluru, Srinivas, Guo, Jun-tao
Julkaisussa BMC Bioinformatics (2018)

A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases

Tekijä Jain, Chirag, Dilthey, Alexander, Koren, Sergey, Aluru, Srinivas, Phillippy, Adam M.
Julkaisussa J Comput Biol (2018)

A fast adaptive algorithm for computing whole-genome homology maps

Tekijä Jain, Chirag, Koren, Sergey, Dilthey, Alexander, Phillippy, Adam M, Aluru, Srinivas
Julkaisussa Bioinformatics (2018)

PCAP: A Whole-Genome Assembly Program

Tekijä Huang, Xiaoqiu, Wang, Jianmin, Aluru, Srinivas, Yang, Shiaw-Pyng, Hillier, LaDeana
Julkaistu 2003

A greedy alignment-free distance estimator for phylogenetic inference

Tekijä Thankachan, Sharma V., Chockalingam, Sriram P., Liu, Yongchao, Krishnan, Ambujam, Aluru, Srinivas
Julkaisussa BMC Bioinformatics (2017)

An alignment-free heuristic for fast sequence comparisons with applications to phylogeny reconstruction

Tekijä Chockalingam, Sriram P., Pannu, Jodh, Hooshmand, Sahar, Thankachan, Sharma V., Aluru, Srinivas
Julkaisussa BMC Bioinformatics (2020)

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

Tekijä Jain, Chirag, Rodriguez-R, Luis M., Phillippy, Adam M., Konstantinidis, Konstantinos T., Aluru, Srinivas
Julkaisussa Nat Commun (2018)

Reply to: “Re-evaluating the evidence for a universal genetic boundary among microbial species”

Tekijä Rodriguez-R, Luis M., Jain, Chirag, Conrad, Roth E., Aluru, Srinivas, Konstantinidis, Konstantinos T.
Julkaisussa Nat Commun (2021)