Estimating coverage in metagenomic data sets and why it matters

von Rodriguez-R, Luis M, Konstantinidis, Konstantinos T
Veröffentlicht in ISME J (2014)

MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences

von Luo, Chengwei, Rodriguez-R, Luis M., Konstantinidis, Konstantinos T.
Veröffentlicht 2014

ROCker: accurate detection and quantification of target genes in short-read metagenomic data sets by modeling sliding-window bitscores

von Orellana, Luis H., Rodriguez-R, Luis M., Konstantinidis, Konstantinos T.
Veröffentlicht in Nucleic Acids Res (2017)

Strengths and Limitations of 16S rRNA Gene Amplicon Sequencing in Revealing Temporal Microbial Community Dynamics

von Poretsky, Rachel, Rodriguez-R, Luis M., Luo, Chengwei, Tsementzi, Despina, Konstantinidis, Konstantinos T.
Veröffentlicht 2014

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

von Jain, Chirag, Rodriguez-R, Luis M., Phillippy, Adam M., Konstantinidis, Konstantinos T., Aluru, Srinivas
Veröffentlicht in Nat Commun (2018)

Reply to: “Re-evaluating the evidence for a universal genetic boundary among microbial species”

von Rodriguez-R, Luis M., Jain, Chirag, Conrad, Roth E., Aluru, Srinivas, Konstantinidis, Konstantinos T.
Veröffentlicht in Nat Commun (2021)

Shifts in bacterial communities of two caribbean reef-building coral species affected by white plague disease

von Cárdenas, Anny, Rodriguez-R, Luis M, Pizarro, Valeria, Cadavid, Luis F, Arévalo-Ferro, Catalina
Veröffentlicht 2012

Nonpareil 3: Fast Estimation of Metagenomic Coverage and Sequence Diversity

von Rodriguez-R, Luis M., Gunturu, Santosh, Tiedje, James M., Cole, James R., Konstantinidis, Konstantinos T.
Veröffentlicht in mSystems (2018)

Microbial community successional patterns in beach sands impacted by the Deepwater Horizon oil spill

von Rodriguez-R, Luis M, Overholt, Will A, Hagan, Christopher, Huettel, Markus, Kostka, Joel E, Konstantinidis, Konstantinos T
Veröffentlicht in ISME J (2015)

Genomes-based phylogeny of the genus Xanthomonas

von Rodriguez-R, Luis M, Grajales, Alejandro, Arrieta-Ortiz, Mario L, Salazar, Camilo, Restrepo, Silvia, Bernal, Adriana
Veröffentlicht 2012

The Reliability of Metagenome-Assembled Genomes (MAGs) in Representing Natural Populations: Insights from Comparing MAGs against Isolate Genomes Derived from the Same Fecal Sample

von Meziti, Alexandra, Rodriguez-R, Luis M., Hatt, Janet K., Peña-Gonzalez, Angela, Levy, Karen, Konstantinidis, Konstantinos T.
Veröffentlicht in Appl Environ Microbiol (2021)

Model-based Comparisons of the Abundance Dynamics of Bacterial Communities in Two Lakes

von Dam, Phuongan, Rodriguez-R, Luis M., Luo, Chengwei, Hatt, Janet, Tsementzi, Despina, Konstantinidis, Konstantinos T., Voit, Eberhard O.
Veröffentlicht in Sci Rep (2020)

An Improved Method for TAL Effectors DNA-Binding Sites Prediction Reveals Functional Convergence in TAL Repertoires of Xanthomonas oryzae Strains

von Pérez-Quintero, Alvaro L., Rodriguez-R, Luis M., Dereeper, Alexis, López, Camilo, Koebnik, Ralf, Szurek, Boris, Cunnac, Sebastien
Veröffentlicht 2013

How Much Do rRNA Gene Surveys Underestimate Extant Bacterial Diversity?

von Rodriguez-R, Luis M., Castro, Juan C., Kyrpides, Nikos C., Cole, James R., Tiedje, James M., Konstantinidis, Konstantinos T.
Veröffentlicht in Appl Environ Microbiol (2018)

Quantifying the changes in genetic diversity within sequence-discrete bacterial populations across a spatial and temporal riverine gradient

von Meziti, Alexandra, Tsementzi, Despina, Rodriguez-R, Luis M., Hatt, Janet K., Karayanni, Hera, Kormas, Konstantinos A., Konstantinidis, Konstantinos T.
Veröffentlicht in ISME J (2018)

The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level

von Rodriguez-R, Luis M, Gunturu, Santosh, Harvey, William T, Rosselló-Mora, Ramon, Tiedje, James M, Cole, James R, Konstantinidis, Konstantinos T
Veröffentlicht in Nucleic Acids Res (2018)

imGLAD: accurate detection and quantification of target organisms in metagenomes

von Castro, Juan C., Rodriguez-R, Luis M., Harvey, William T., Weigand, Michael R., Hatt, Janet K., Carter, Michelle Q., Konstantinidis, Konstantinos T.
Veröffentlicht in PeerJ (2018)

Biofilms on Hospital Shower Hoses: Characterization and Implications for Nosocomial Infections

von Soto-Giron, Maria J., Rodriguez-R, Luis M., Luo, Chengwei, Elk, Michael, Ryu, Hodon, Hoelle, Jill, Santo Domingo, Jorge W., Konstantinidis, Konstantinos T.
Veröffentlicht in Appl Environ Microbiol (2016)

An RNAi in silico approach to find an optimal shRNA cocktail against HIV-1

von Méndez-Ortega, María C, Restrepo, Silvia, Rodríguez-R, Luis M, Pérez, Iván, Mendoza, Juan C, Martínez, Andrés P, Sierra, Roberto, Rey-Benito, Gloria J
Veröffentlicht 2010

Draft Genome Sequence of Bacillus cereus LA2007, a Human-Pathogenic Isolate Harboring Anthrax-Like Plasmids

von Pena-Gonzalez, Angela, Marston, Chung K., Rodriguez-R, Luis M., Kolton, Cari B., Garcia-Diaz, Julia, Theppote, Amanda, Frace, Michael, Konstantinidis, Konstantinos T., Hoffmaster, Alex R.
Veröffentlicht in Genome Announc (2017)