Estimating coverage in metagenomic data sets and why it matters

av Rodriguez-R, Luis M, Konstantinidis, Konstantinos T
I publikationen ISME J (2014)

MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences

av Luo, Chengwei, Rodriguez-R, Luis M., Konstantinidis, Konstantinos T.
Publicerad 2014

ROCker: accurate detection and quantification of target genes in short-read metagenomic data sets by modeling sliding-window bitscores

av Orellana, Luis H., Rodriguez-R, Luis M., Konstantinidis, Konstantinos T.
I publikationen Nucleic Acids Res (2017)

Strengths and Limitations of 16S rRNA Gene Amplicon Sequencing in Revealing Temporal Microbial Community Dynamics

av Poretsky, Rachel, Rodriguez-R, Luis M., Luo, Chengwei, Tsementzi, Despina, Konstantinidis, Konstantinos T.
Publicerad 2014

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

av Jain, Chirag, Rodriguez-R, Luis M., Phillippy, Adam M., Konstantinidis, Konstantinos T., Aluru, Srinivas
I publikationen Nat Commun (2018)

Reply to: “Re-evaluating the evidence for a universal genetic boundary among microbial species”

av Rodriguez-R, Luis M., Jain, Chirag, Conrad, Roth E., Aluru, Srinivas, Konstantinidis, Konstantinos T.
I publikationen Nat Commun (2021)

Shifts in bacterial communities of two caribbean reef-building coral species affected by white plague disease

av Cárdenas, Anny, Rodriguez-R, Luis M, Pizarro, Valeria, Cadavid, Luis F, Arévalo-Ferro, Catalina
Publicerad 2012

Nonpareil 3: Fast Estimation of Metagenomic Coverage and Sequence Diversity

av Rodriguez-R, Luis M., Gunturu, Santosh, Tiedje, James M., Cole, James R., Konstantinidis, Konstantinos T.
I publikationen mSystems (2018)

Microbial community successional patterns in beach sands impacted by the Deepwater Horizon oil spill

av Rodriguez-R, Luis M, Overholt, Will A, Hagan, Christopher, Huettel, Markus, Kostka, Joel E, Konstantinidis, Konstantinos T
I publikationen ISME J (2015)

Genomes-based phylogeny of the genus Xanthomonas

av Rodriguez-R, Luis M, Grajales, Alejandro, Arrieta-Ortiz, Mario L, Salazar, Camilo, Restrepo, Silvia, Bernal, Adriana
Publicerad 2012

The Reliability of Metagenome-Assembled Genomes (MAGs) in Representing Natural Populations: Insights from Comparing MAGs against Isolate Genomes Derived from the Same Fecal Sample

av Meziti, Alexandra, Rodriguez-R, Luis M., Hatt, Janet K., Peña-Gonzalez, Angela, Levy, Karen, Konstantinidis, Konstantinos T.
I publikationen Appl Environ Microbiol (2021)

Model-based Comparisons of the Abundance Dynamics of Bacterial Communities in Two Lakes

av Dam, Phuongan, Rodriguez-R, Luis M., Luo, Chengwei, Hatt, Janet, Tsementzi, Despina, Konstantinidis, Konstantinos T., Voit, Eberhard O.
I publikationen Sci Rep (2020)

An Improved Method for TAL Effectors DNA-Binding Sites Prediction Reveals Functional Convergence in TAL Repertoires of Xanthomonas oryzae Strains

av Pérez-Quintero, Alvaro L., Rodriguez-R, Luis M., Dereeper, Alexis, López, Camilo, Koebnik, Ralf, Szurek, Boris, Cunnac, Sebastien
Publicerad 2013

How Much Do rRNA Gene Surveys Underestimate Extant Bacterial Diversity?

av Rodriguez-R, Luis M., Castro, Juan C., Kyrpides, Nikos C., Cole, James R., Tiedje, James M., Konstantinidis, Konstantinos T.
I publikationen Appl Environ Microbiol (2018)

Quantifying the changes in genetic diversity within sequence-discrete bacterial populations across a spatial and temporal riverine gradient

av Meziti, Alexandra, Tsementzi, Despina, Rodriguez-R, Luis M., Hatt, Janet K., Karayanni, Hera, Kormas, Konstantinos A., Konstantinidis, Konstantinos T.
I publikationen ISME J (2018)

The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level

av Rodriguez-R, Luis M, Gunturu, Santosh, Harvey, William T, Rosselló-Mora, Ramon, Tiedje, James M, Cole, James R, Konstantinidis, Konstantinos T
I publikationen Nucleic Acids Res (2018)

imGLAD: accurate detection and quantification of target organisms in metagenomes

av Castro, Juan C., Rodriguez-R, Luis M., Harvey, William T., Weigand, Michael R., Hatt, Janet K., Carter, Michelle Q., Konstantinidis, Konstantinos T.
I publikationen PeerJ (2018)

Biofilms on Hospital Shower Hoses: Characterization and Implications for Nosocomial Infections

av Soto-Giron, Maria J., Rodriguez-R, Luis M., Luo, Chengwei, Elk, Michael, Ryu, Hodon, Hoelle, Jill, Santo Domingo, Jorge W., Konstantinidis, Konstantinos T.
I publikationen Appl Environ Microbiol (2016)

An RNAi in silico approach to find an optimal shRNA cocktail against HIV-1

av Méndez-Ortega, María C, Restrepo, Silvia, Rodríguez-R, Luis M, Pérez, Iván, Mendoza, Juan C, Martínez, Andrés P, Sierra, Roberto, Rey-Benito, Gloria J
Publicerad 2010

Draft Genome Sequence of Bacillus cereus LA2007, a Human-Pathogenic Isolate Harboring Anthrax-Like Plasmids

av Pena-Gonzalez, Angela, Marston, Chung K., Rodriguez-R, Luis M., Kolton, Cari B., Garcia-Diaz, Julia, Theppote, Amanda, Frace, Michael, Konstantinidis, Konstantinos T., Hoffmaster, Alex R.
I publikationen Genome Announc (2017)