Estimating coverage in metagenomic data sets and why it matters

Por Rodriguez-R, Luis M, Konstantinidis, Konstantinos T
Publicado no ISME J (2014)

MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences

Por Luo, Chengwei, Rodriguez-R, Luis M., Konstantinidis, Konstantinos T.
Publicado em 2014

ROCker: accurate detection and quantification of target genes in short-read metagenomic data sets by modeling sliding-window bitscores

Por Orellana, Luis H., Rodriguez-R, Luis M., Konstantinidis, Konstantinos T.
Publicado no Nucleic Acids Res (2017)

Strengths and Limitations of 16S rRNA Gene Amplicon Sequencing in Revealing Temporal Microbial Community Dynamics

Por Poretsky, Rachel, Rodriguez-R, Luis M., Luo, Chengwei, Tsementzi, Despina, Konstantinidis, Konstantinos T.
Publicado em 2014

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

Por Jain, Chirag, Rodriguez-R, Luis M., Phillippy, Adam M., Konstantinidis, Konstantinos T., Aluru, Srinivas
Publicado no Nat Commun (2018)

Reply to: “Re-evaluating the evidence for a universal genetic boundary among microbial species”

Por Rodriguez-R, Luis M., Jain, Chirag, Conrad, Roth E., Aluru, Srinivas, Konstantinidis, Konstantinos T.
Publicado no Nat Commun (2021)

Shifts in bacterial communities of two caribbean reef-building coral species affected by white plague disease

Por Cárdenas, Anny, Rodriguez-R, Luis M, Pizarro, Valeria, Cadavid, Luis F, Arévalo-Ferro, Catalina
Publicado em 2012

Nonpareil 3: Fast Estimation of Metagenomic Coverage and Sequence Diversity

Por Rodriguez-R, Luis M., Gunturu, Santosh, Tiedje, James M., Cole, James R., Konstantinidis, Konstantinos T.
Publicado no mSystems (2018)

Microbial community successional patterns in beach sands impacted by the Deepwater Horizon oil spill

Por Rodriguez-R, Luis M, Overholt, Will A, Hagan, Christopher, Huettel, Markus, Kostka, Joel E, Konstantinidis, Konstantinos T
Publicado no ISME J (2015)

Genomes-based phylogeny of the genus Xanthomonas

Por Rodriguez-R, Luis M, Grajales, Alejandro, Arrieta-Ortiz, Mario L, Salazar, Camilo, Restrepo, Silvia, Bernal, Adriana
Publicado em 2012

The Reliability of Metagenome-Assembled Genomes (MAGs) in Representing Natural Populations: Insights from Comparing MAGs against Isolate Genomes Derived from the Same Fecal Sample

Por Meziti, Alexandra, Rodriguez-R, Luis M., Hatt, Janet K., Peña-Gonzalez, Angela, Levy, Karen, Konstantinidis, Konstantinos T.
Publicado no Appl Environ Microbiol (2021)

Model-based Comparisons of the Abundance Dynamics of Bacterial Communities in Two Lakes

Por Dam, Phuongan, Rodriguez-R, Luis M., Luo, Chengwei, Hatt, Janet, Tsementzi, Despina, Konstantinidis, Konstantinos T., Voit, Eberhard O.
Publicado no Sci Rep (2020)

An Improved Method for TAL Effectors DNA-Binding Sites Prediction Reveals Functional Convergence in TAL Repertoires of Xanthomonas oryzae Strains

Por Pérez-Quintero, Alvaro L., Rodriguez-R, Luis M., Dereeper, Alexis, López, Camilo, Koebnik, Ralf, Szurek, Boris, Cunnac, Sebastien
Publicado em 2013

How Much Do rRNA Gene Surveys Underestimate Extant Bacterial Diversity?

Por Rodriguez-R, Luis M., Castro, Juan C., Kyrpides, Nikos C., Cole, James R., Tiedje, James M., Konstantinidis, Konstantinos T.
Publicado no Appl Environ Microbiol (2018)

Quantifying the changes in genetic diversity within sequence-discrete bacterial populations across a spatial and temporal riverine gradient

Por Meziti, Alexandra, Tsementzi, Despina, Rodriguez-R, Luis M., Hatt, Janet K., Karayanni, Hera, Kormas, Konstantinos A., Konstantinidis, Konstantinos T.
Publicado no ISME J (2018)

The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level

Por Rodriguez-R, Luis M, Gunturu, Santosh, Harvey, William T, Rosselló-Mora, Ramon, Tiedje, James M, Cole, James R, Konstantinidis, Konstantinos T
Publicado no Nucleic Acids Res (2018)

imGLAD: accurate detection and quantification of target organisms in metagenomes

Por Castro, Juan C., Rodriguez-R, Luis M., Harvey, William T., Weigand, Michael R., Hatt, Janet K., Carter, Michelle Q., Konstantinidis, Konstantinos T.
Publicado no PeerJ (2018)

Biofilms on Hospital Shower Hoses: Characterization and Implications for Nosocomial Infections

Por Soto-Giron, Maria J., Rodriguez-R, Luis M., Luo, Chengwei, Elk, Michael, Ryu, Hodon, Hoelle, Jill, Santo Domingo, Jorge W., Konstantinidis, Konstantinos T.
Publicado no Appl Environ Microbiol (2016)

An RNAi in silico approach to find an optimal shRNA cocktail against HIV-1

Por Méndez-Ortega, María C, Restrepo, Silvia, Rodríguez-R, Luis M, Pérez, Iván, Mendoza, Juan C, Martínez, Andrés P, Sierra, Roberto, Rey-Benito, Gloria J
Publicado em 2010

Draft Genome Sequence of Bacillus cereus LA2007, a Human-Pathogenic Isolate Harboring Anthrax-Like Plasmids

Por Pena-Gonzalez, Angela, Marston, Chung K., Rodriguez-R, Luis M., Kolton, Cari B., Garcia-Diaz, Julia, Theppote, Amanda, Frace, Michael, Konstantinidis, Konstantinos T., Hoffmaster, Alex R.
Publicado no Genome Announc (2017)