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An alignment-free heuristic for fast sequence comparisons with applications to phylogeny reconstruction

BACKGROUND: Alignment-free methods for sequence comparisons have become popular in many bioinformatics applications, specifically in the estimation of sequence similarity measures to construct phylogenetic trees. Recently, the average common substring measure, ACS, and its k-mismatch counterpart, AC...

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Veröffentlicht in:BMC Bioinformatics
Hauptverfasser: Chockalingam, Sriram P., Pannu, Jodh, Hooshmand, Sahar, Thankachan, Sharma V., Aluru, Srinivas
Format: Artigo
Sprache:Inglês
Veröffentlicht: BioMed Central 2020
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Online Zugang:https://ncbi.nlm.nih.gov/pmc/articles/PMC7672814/
https://ncbi.nlm.nih.gov/pubmed/33203364
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s12859-020-03738-5
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